View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12040_high_5 (Length: 574)

Name: NF12040_high_5
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12040_high_5
NF12040_high_5
[»] chr8 (1 HSPs)
chr8 (7-546)||(35400663-35401208)
[»] chr7 (11 HSPs)
chr7 (427-546)||(11452579-11452697)
chr7 (116-325)||(11452345-11452559)
chr7 (427-560)||(11380477-11380609)
chr7 (432-560)||(11403880-11404009)
chr7 (143-328)||(11403560-11403748)
chr7 (107-299)||(11380253-11380455)
chr7 (7-55)||(11452237-11452285)
chr7 (7-73)||(11380156-11380220)
chr7 (203-328)||(11382310-11382427)
chr7 (377-417)||(11382494-11382534)
chr7 (7-55)||(11403425-11403473)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 546
Target Start/End: Original strand, 35400663 - 35401208
Alignment:
Q  7 aaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaatttggatatggttttcctctaannnnnnnnnnngaatctgattgannnnnnn 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||           
T  35400663 aaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaatttggatatggttttcctctaattttttttt--gaatctgattgattttttt 35400760  T
Q  107 aattgtatatttagatgatccgatcacccaaatcataaaccaaagcgtatatcatcagtttagtctggtttgtttctacttcaaaaaa----------tt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  35400761 aattgtatatttagatgatccgatcacccaaatcataaaccaaagcgtatatcatcagtttagtctggtttgtttctacttcaaaaaattgatgaaaatt 35400860  T
Q  197 gaatcaaattgaaccatgtagattttgtaggtttgaatatatattctattaaannnnnnncatcaatttctagagatatcagcacggaacagaaagtaaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  35400861 gaatcaaattgaaccatgtagattttgtaggtttgaatatatattctattaaatttttttcatcaatttctagagatatcagcacggaacagaaagtaaa 35400960  T
Q  297 gttttatgaaagagtttgaaatatctgttacaggcattatgtatgtcaacctcaaaactggatacgtgtggcnnnnnnnnaatccatttcagaccaattg 396  Q
    |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||    
T  35400961 gttttat--aaaagtttgaaatatctgttacaggcattatgtatgtcaacctcaaaactggatacatgtggcttttttttaatccatttcagaccaattg 35401058  T
Q  397 attcacttttatatg-tgtattannnnnnnnaatttaaaaatgagcatttggtttcgatttaaggacgatcgtcacctctattctctttgaannnnnnnn 495  Q
    ||||||||||||  |   | ||         |||| |||| || ||||||||||| ||||||||||| ||| ||| | ||| ||||||||||            
T  35401059 attcacttttatgcgccctttttttttttggaattaaaaactgggcatttggttttgatttaaggac-atcatcatcactagtctctttgaatttttttt 35401157  T
Q  496 accttttcaatgaatggaacaataaataatctgaaactcttgatattataa 546  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35401158 accttttcaattaatggaacaataaataatctgaaactcttgatattataa 35401208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 427 - 546
Target Start/End: Original strand, 11452579 - 11452697
Alignment:
Q  427 aatttaaaaatgagcatttggtttcgatttaaggacgatcgtcacctctattctctttgaannnnnnnnaccttttcaatgaatggaacaataaataatc 526  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  11452579 aattaaaaaatgagcatttggttttgatttaaggacgatcatcacctctattctctttgaattttttt-accttttcaatgaatggaacaataaataatc 11452677  T
Q  527 tgaaactcttgatattataa 546  Q
    ||||||||||||||||||||    
T  11452678 tgaaactcttgatattataa 11452697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 11452345 - 11452559
Alignment:
Q  116 tttagatgatccgatcacccaaatcataaaccaaagcgtatatcatcagtttagtctggtttgtttctacttcaaaaaattga----------atcaaat 205  Q
    |||||||||||| ||||||| || ||  ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||          ||| |||    
T  11452345 tttagatgatccaatcacccgaacca--aaccaaaacctatatcatcagtttagtttggtttgtttctacttcaaaaaattgattaaaattgaatcgaat 11452442  T
Q  206 tgaaccatgtagattttgtaggtttgaatatatattctattaaannnnnnnca-tcaatttctagagatatcagcacggaacagaaagtaaagttttatg 304  Q
    ||||||||||||||||||| |||||||||||    |||||| ||       || |||||||||||||||||||||| ||||||||||||||||||  |||    
T  11452443 tgaaccatgtagattttgtcggtttgaatat----tctattgaatttttttcaatcaatttctagagatatcagcaaggaacagaaagtaaagttccatg 11452538  T
Q  305 aaagagtttgaaatatctgtt 325  Q
    |||||||||||||||| ||||    
T  11452539 aaagagtttgaaatatttgtt 11452559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 427 - 560
Target Start/End: Original strand, 11380477 - 11380609
Alignment:
Q  427 aatttaaaaatgagcatttggtttcgatttaaggacgatcgtcacctctattctctttgaannnnnnnnaccttttcaatgaatggaacaataaataatc 526  Q
    |||| ||||||||||||||| ||| |||||||||||||||  || ||||||||||||||||         ||||||||||||||||||||||||||||||    
T  11380477 aattaaaaaatgagcatttgattttgatttaaggacgatcaacaactctattctctttgaattttgttg-ccttttcaatgaatggaacaataaataatc 11380575  T
Q  527 tgaaactcttgatattataatcatattgaatatt 560  Q
    ||||||||||||||||||||||||||| ||||||    
T  11380576 tgaaactcttgatattataatcatattcaatatt 11380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 432 - 560
Target Start/End: Original strand, 11403880 - 11404009
Alignment:
Q  432 aaaaatgagcatttggtttc-gatttaaggacgatcgtcacctctattctctttgaannnnnnnnaccttttcaatgaatggaacaataaataatctgaa 530  Q
    ||||||| |||||||||||  ||||||||||||||| ||||| |||||||||| ||         ||| |||||||||||||||||||||||||||||||    
T  11403880 aaaaatgtgcatttggtttttgatttaaggacgatcatcaccactattctcttggattgttttttaccatttcaatgaatggaacaataaataatctgaa 11403979  T
Q  531 actcttgatattataatcatattgaatatt 560  Q
    ||||||||||||||||||||||| ||||||    
T  11403980 actcttgatattataatcatattcaatatt 11404009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 11403560 - 11403748
Alignment:
Q  143 aaaccaaagcgtatatcatcagtttagtctggtttgtttctacttcaa-----------aaaattgaatcaaattgaaccatgtagattttgtaggtttg 231  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||| ||||||    
T  11403560 aaaccaaaacctatatcatcagtttagtttggtttgtttctacttcaaaaaaattaattaaaattgaatcaaattgaaccatgtagattttgtcggtttg 11403659  T
Q  232 aatatatattctattaaannnnnnncatcaatttctagagatatcagcacggaacagaaagtaaagttttatgaaagagtttgaaatatctgttaca 328  Q
        || |||||||| ||       | ||||||||| |||||||||||| |||||| ||||||| |||  ||    |||||||||||||||||||||    
T  11403660 ----tacattctattgaattttttccgtcaatttcttgagatatcagcaaggaacataaagtaatgttccat----gagtttgaaatatctgttaca 11403748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 107 - 299
Target Start/End: Original strand, 11380253 - 11380455
Alignment:
Q  107 aattgtatatttagatgatccgatcacccaaatcataaaccaaagcgtatatcatcagtttagtctggtttgtttctacttcaa-----------aaaat 195  Q
    |||| ||| |||||||||||| |||||| ||| ||  ||||||| ||||||||||||||||||| |||||||||||| ||||||           |||||    
T  11380253 aattatatttttagatgatccaatcacctaaacca--aaccaaaacgtatatcatcagtttagtttggtttgtttctgcttcaaaaaaattgattaaaat 11380350  T
Q  196 tgaatcaaattgaaccatgtagattttgtaggtttgaata-tatattctattaaannnnnnncatcaatttctagagatatcagcacggaacagaaagta 294  Q
    |||||||||| |||||||||||||||||| ||||| |||| | ||||   ||          |||||||||||||||||||||||| |||||||||||||    
T  11380351 tgaatcaaatcgaaccatgtagattttgtcggttttaatattctattgatttcttttttttccatcaatttctagagatatcagcaaggaacagaaagta 11380450  T
Q  295 aagtt 299  Q
    |||||    
T  11380451 aagtt 11380455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 11452237 - 11452285
Alignment:
Q  7 aaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaat 55  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  11452237 aaaactgcataagaaattgcaacaaacacaaacaaacagattagagaat 11452285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 11380156 - 11380220
Alignment:
Q  7 aaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaatttggatatggttttcctc 73  Q
    |||||| | ||||||||||||||||||||||||| ||  |||||||||| || ||||| ||||||||    
T  11380156 aaaactacgtaagaaattgcaacaaacacaaacagac--agtagagaatctgaatatgattttcctc 11380220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 11382310 - 11382427
Alignment:
Q  203 aattgaaccatgtagattttgtaggtttgaatatatattctattaaannnnnnncatcaatttctagagatatcagcacggaacagaaagtaaagtttta 302  Q
    |||||||||||||||||||||| |||||||| ||    |||||| ||       | ||||||||| |||||||||||| |||||| ||||||| |||  |    
T  11382310 aattgaaccatgtagattttgtcggtttgaacat----tctattgaatttttttcgtcaatttcttgagatatcagcaaggaacataaagtaatgttcca 11382405  T
Q  303 tgaaagagtttgaaatatctgttaca 328  Q
    |    |||||||||||||||||||||    
T  11382406 t----gagtttgaaatatctgttaca 11382427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 11382494 - 11382534
Alignment:
Q  377 aatccatttcagaccaattgattcacttttatatgtgtatt 417  Q
    ||||||||| |||||||||||||||||||||| | ||||||    
T  11382494 aatccattttagaccaattgattcacttttatttatgtatt 11382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 11403425 - 11403473
Alignment:
Q  7 aaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaat 55  Q
    |||||||||||| ||| | |||||||||||||||||||  |||||||||    
T  11403425 aaaactgcataaaaaactccaacaaacacaaacaaacagtgtagagaat 11403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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