View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_7 (Length: 545)
Name: NF12040_high_7
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 55012871 - 55012359
Alignment:
| Q |
19 |
ttaaaaagaataagcaataagaattcagtattgtggatgttttttggaacatagtaattagcaatggtgaaagttgggaacatgatttcaaagaaggaaa |
118 |
Q |
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| T |
55012871 |
ttaaaaagaataagcaataagaattcagtattgtggatgttttttggaacatagtaattagcaatggtgaaagttggtaacatgatttcaaagaaggaaa |
55012772 |
T |
|
| Q |
119 |
catcaattaaagaggaagtgaataagagggtgagtactaattaagatatgaatccataaggggaaatgtagatatactgatgcaaattccgtgatattga |
218 |
Q |
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| T |
55012771 |
catcaattaaagaggaagtgaataagagggtgagtactaattaagatatgaatccataaggggaaatgtagatatactaatgcaaattccgtgatattga |
55012672 |
T |
|
| Q |
219 |
actttatataagtaataaattgatctgaaccaattaagcatgtcctggttgtcttgctcttggaaatagttgacatgaatatacaaaaatggagtaacta |
318 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55012671 |
actttatacaagtaataaattcatctgaaccaattaagcatgtcctggttgtcttgctcttggaaatagttgacatgaatatacaaaaatggagtaacta |
55012572 |
T |
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| Q |
319 |
gtgggaaaggaaaaactttctttacatttaatagttgtgggacaggtgggggttggggtattcgttgggatttgcagagagcattgaatagcaatattca |
418 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55012571 |
gtgggaaagg--aaactttctttacatttaatagttgtgggacaggtgggagttggggtattcgttgggatttgcagagagcattgaatagcaatattca |
55012474 |
T |
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| Q |
419 |
tgtaatctgtcattggcttttcattgagggatttaactccttcacctgctgttgtctgtttccactgttcacatatcatccgtttgattaatcctacgta |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55012473 |
tgtaatctgtcattggcttttcattgagggatttaactccttcacctgctgttgtctgtttccactgttcacatatcatccgtttgattaatcctacgta |
55012374 |
T |
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| Q |
519 |
tttcatactttatct |
533 |
Q |
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| T |
55012373 |
tttcatactttatct |
55012359 |
T |
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