View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_11 (Length: 484)
Name: NF12040_low_11
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_11 |
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| [»] scaffold0516 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 182 - 468
Target Start/End: Original strand, 44220188 - 44220475
Alignment:
| Q |
182 |
gagagatttgtgtatccacttcggtccaataataacctacattcgagggagataacatctctcaattccattatcaaagagttctttacaaatatatata |
281 |
Q |
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| T |
44220188 |
gagagatttgtgtatccacttcggtccaacaataacctacattcgagggagataacatctctcaattccattatcaaagaattctttacaaatatatata |
44220287 |
T |
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| Q |
282 |
gataattgcaagannnnnnnnnnnct--gaacaagatagttgcaagaaattaacttcaataaactctcaaagaatcaaaattgcaattttatagctccaa |
379 |
Q |
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| T |
44220288 |
gataattgcaagatttttttttttttttgaacaagatagttgcaagaaattaacttcaataaactctcaaa-aatcaaaattgcagttttatagctccaa |
44220386 |
T |
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| Q |
380 |
actatggacaaattgcatcgtgacattatgcttatatttcaaaaaggacctttggagatagctttcaattgccttaaatgggttcatta |
468 |
Q |
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| T |
44220387 |
actatggacaaattgcatcgtgacattatgcttatatttcaaaaaggacctttggagatagctttcaattgccttaaatggattcatta |
44220475 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 44218528 - 44218442
Alignment:
| Q |
1 |
tcatatatgcagtgaaaagaggaaagatttccttcatcatgggaagacaaagaatatacatatacaataactctagtaataagggat |
87 |
Q |
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| T |
44218528 |
tcatatatgtagtgaaaagaggaaagatttccttcatcatgggaagacaaagaatatacatatacaataactctagtactaagggat |
44218442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9716994 - 9716942
Alignment:
| Q |
1 |
tcatatatgcagtgaaaagaggaaagatttccttcatcatgggaagacaaagaa |
54 |
Q |
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| T |
9716994 |
tcatatatgtagtgaaaagaggaaaga-ttccttcatcatgggaaaacaaagaa |
9716942 |
T |
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Target: scaffold0516 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1948 - 1904
Alignment:
| Q |
1 |
tcatatatgcagtgaaaagaggaaagatttccttcatcatgggaa |
45 |
Q |
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| T |
1948 |
tcatacatgtagtgaaaagaggaaatatttccttcatcatgggaa |
1904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 32609608 - 32609571
Alignment:
| Q |
317 |
agttgcaagaaattaacttcaataaactctcaaagaat |
354 |
Q |
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| T |
32609608 |
agttacaagaaattaacttcaacaaactctcaaagaat |
32609571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 6677590 - 6677549
Alignment:
| Q |
238 |
atctctcaattccattatcaaagagttctttacaaatatata |
279 |
Q |
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| T |
6677590 |
atctctcaaatccattatcaaagacttctttacaaagatata |
6677549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23727403 - 23727447
Alignment:
| Q |
1 |
tcatatatgcagtgaaaagaggaaagatttccttcatcatgggaa |
45 |
Q |
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| T |
23727403 |
tcatacatgtagtgaaaagaggaaagttttccttcgtcatgggaa |
23727447 |
T |
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