View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_12 (Length: 470)
Name: NF12040_low_12
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 157 - 441
Target Start/End: Original strand, 25947867 - 25948151
Alignment:
| Q |
157 |
gtaacttgcacttgagtgatggagatattttagtactgtgttccaaaagatgttctgaaaggaaaatacttaaagtagtgaagctaaaataatctggcaa |
256 |
Q |
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| T |
25947867 |
gtaacttgcacttgagtgatggagatattttagcactgtgttccgaaagatgttctgaaaggaaaatacttaaagtagtgaagctaaaataatctggcaa |
25947966 |
T |
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| Q |
257 |
tgttctaatcatctattgactgacttctggaaaatttagactgttatgtgcaggtatgctttgtactatgtgttaaaatcaaatataaatcaaacattat |
356 |
Q |
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| T |
25947967 |
tgttctaatcatctattgactgacttctggaaaatttagactgttatgtgcaggtatgctttgtactatgtgttaaaatcaaatataaatcaaacattat |
25948066 |
T |
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| Q |
357 |
gattcgctagttgtcgtctcaattacatttaattagcacactagcccaatagttgtcaaatttagttttaagttgtgctagtgtg |
441 |
Q |
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| T |
25948067 |
gattcgctagttgtcgtctcaattacgtttaattagcactttagcccaatagttgtcaaatttagttttaagttgtgctagtgtg |
25948151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 25947601 - 25947754
Alignment:
| Q |
6 |
acttctgtaatagaaccatgcacagaacaccaaacattgttaatattcattccactgttccatcacacaagttacgagtgaaattgtaccgaatgttagt |
105 |
Q |
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| T |
25947601 |
acttctgtaatagaaccatgcacagaacaccaaacattgttaatattcattccactgctccatcacacaagttacgagtgaaattgtaccgaatgttagt |
25947700 |
T |
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| Q |
106 |
gctgctttatgcatttatatatactgcaaaatagactagtaatacaatgtggta |
159 |
Q |
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| T |
25947701 |
gctgctttatgcatttatatatactgcaaaatagactagtaatacaatgtggta |
25947754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 25937747 - 25937869
Alignment:
| Q |
203 |
aagatgttctgaaaggaaaatacttaaagtagtgaagctaaaataatctggcaatgttctaatcatctattgactgacttctggaaaatttagactgtta |
302 |
Q |
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||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
25937747 |
aagatgtgctgaaaggaaaatacttaaaattgtgaagctaaa-taatctggcaatgttcaaatcatctattgacagacttctggaaaatttagaccgtta |
25937845 |
T |
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| Q |
303 |
tgtgcaggta-tgctttgtactat |
325 |
Q |
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| T |
25937846 |
tgcgcaggtattgcttcgtactat |
25937869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 2663877 - 2663943
Alignment:
| Q |
89 |
ttgtaccgaatgttagtgctgctttatgcatttatatatactgcaaaatagactagtaatacaatgtg |
156 |
Q |
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| T |
2663877 |
ttgtacccaatgttggtgctgctt-atgtatttatatatacagcaaaatagactagtaacacaatgtg |
2663943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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