View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_14 (Length: 436)
Name: NF12040_low_14
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 71 - 387
Target Start/End: Complemental strand, 24863972 - 24863656
Alignment:
| Q |
71 |
gcgaagaaaatcaacaatcttgctctctctgtgttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttct |
170 |
Q |
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| T |
24863972 |
gcgaagaaaatcaacaatcttgctctctctgtcttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttct |
24863873 |
T |
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| Q |
171 |
ttgttaatggtacaggtgagagaagaacggacaatcttgtacttggcattacggatactactgccattgagaagctaaagctgaatagctgtgctttaag |
270 |
Q |
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| T |
24863872 |
ttgttaatggtacaggtgagagaagaatggacaatcttgtacttggcattacggatactactgccattgagaagctaaagctgaatcgatgtgctttaag |
24863773 |
T |
|
| Q |
271 |
tctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagta |
370 |
Q |
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| T |
24863772 |
tctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagta |
24863673 |
T |
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| Q |
371 |
aggattgggaatttcat |
387 |
Q |
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| T |
24863672 |
aggattgggaatttcat |
24863656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 24834946 - 24834833
Alignment:
| Q |
260 |
tgtgctttaagtctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtg |
359 |
Q |
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| T |
24834946 |
tgtgctttgagtctccaggctgcaggggtaagtttcaaagttcttgaagatagagatgaagcgatttcttgcttcgatttgatgaggaattattttcgtg |
24834847 |
T |
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| Q |
360 |
gtgtaatagtaagg |
373 |
Q |
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| T |
24834846 |
gtgtactcgtaagg |
24834833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 24835150 - 24835050
Alignment:
| Q |
77 |
aaaatcaacaatcttgctctctctgtgttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttctttgtta |
176 |
Q |
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||||| ||| ||||||| ||| |||| |||||||| | | || |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24835150 |
aaaattaacgatcttgccctcactgtcttaggatattcttctattcagttaccgtgtctccatgcccctcacattcttgatcttgtccacttctttgtta |
24835051 |
T |
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| Q |
177 |
a |
177 |
Q |
| |
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| T |
24835050 |
a |
24835050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 24827457 - 24827350
Alignment:
| Q |
73 |
gaagaaaatcaacaatcttgctctctctgtgttaggatactatcct---cttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttc |
169 |
Q |
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||||||||| ||||||||||| || |||| |||||||||| |||| |||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
24827457 |
gaagaaaatgaacaatcttgcccttgctgtcttaggatactctcctgatcttcagataccgtgtgtcgatgcccctcacattcttgatcttgtccacttc |
24827358 |
T |
|
| Q |
170 |
tttgttaa |
177 |
Q |
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|| ||||| |
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| T |
24827357 |
ttcgttaa |
24827350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 24855833 - 24855793
Alignment:
| Q |
137 |
gaagcccctcacattcttgatcttgtccacttctttgttaa |
177 |
Q |
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| T |
24855833 |
gaagcccctcacattcttgatattgtccactttttcgttaa |
24855793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 38612934 - 38612848
Alignment:
| Q |
287 |
gtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagtaagg |
373 |
Q |
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| T |
38612934 |
gtaagtttcaaagttcttgaagatagagatgaagcgatttcttgcttcgatttgatgaggaattattttcgtggtgtactcgtaagg |
38612848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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