View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_15 (Length: 420)
Name: NF12040_low_15
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 5063886 - 5063531
Alignment:
| Q |
1 |
ttttaaggaattaaaaaa-tacttagatcgacacaattttgaagttaactagttctttccctcgtgttgggatatttagaattctttctaccaaattgtc |
99 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||| |
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| T |
5063886 |
ttttaaggaattaaaaaaatacttatatcgacacaattttgaagttaactagtttcttcccacgggttaggatatttagaattctttctaccaaattgtc |
5063787 |
T |
|
| Q |
100 |
tagtctaaaatatattaataactaatgatatattcatcgaaattaataagtttcatgcttgaaatgaattattaaatatttgattttacaataattttca |
199 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5063786 |
tagtctaaaatatattaatagctaatgatatatttgttgaaattaataagtttcatgcttgaaatgaattattaaatatttgattttacaataattttca |
5063687 |
T |
|
| Q |
200 |
ctata-----tcttgtcctaatctttgttatcatattaaataataataaaatgttgatgattataatatatgattaagttagggaaaggtccaaggtgtg |
294 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5063686 |
ctatattttttcttgtcctaatctttgttatcatattaaataataataaaatgttgatgattataatatatgattaagttagggaaaggtccaaggtgtg |
5063587 |
T |
|
| Q |
295 |
gatagtggatagggaagttaggtcacgtgtttttgtctgcaaatcagttactcaag |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5063586 |
gatagtggatagggaagttaggtcacgtgtttttgtctgcaaatcagttactcaag |
5063531 |
T |
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