View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_18 (Length: 407)
Name: NF12040_low_18
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 32844696 - 32845077
Alignment:
| Q |
12 |
acagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacg |
111 |
Q |
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| T |
32844696 |
acagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacg |
32844795 |
T |
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| Q |
112 |
acaatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctg |
211 |
Q |
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| T |
32844796 |
acaatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctg |
32844895 |
T |
|
| Q |
212 |
gaagcttgaaaagcatgattattggaagtttaacttaatttttaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844896 |
gaagcttgaaaagcatgattattggaagtttaacttaattttgaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaac |
32844995 |
T |
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| Q |
312 |
agaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaaactctgaacttcaaattcacatttc |
393 |
Q |
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| T |
32844996 |
agaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaaactctgaacttcaaattcacatttc |
32845077 |
T |
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