View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12040_low_2 (Length: 916)

Name: NF12040_low_2
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12040_low_2
NF12040_low_2
[»] chr7 (5 HSPs)
chr7 (828-877)||(10161964-10162013)
chr7 (850-891)||(40108145-40108186)
chr7 (851-891)||(6822542-6822582)
chr7 (851-892)||(8459625-8459666)
chr7 (832-877)||(44185172-44185216)
[»] chr4 (5 HSPs)
chr4 (832-897)||(24019973-24020038)
chr4 (664-721)||(46599080-46599137)
chr4 (664-721)||(46652469-46652526)
chr4 (851-892)||(27384198-27384239)
chr4 (851-891)||(24310530-24310570)
[»] scaffold0155 (1 HSPs)
scaffold0155 (851-891)||(3280-3320)
[»] scaffold0054 (1 HSPs)
scaffold0054 (851-891)||(31609-31649)
[»] chr8 (6 HSPs)
chr8 (831-891)||(36885495-36885555)
chr8 (851-891)||(37392137-37392177)
chr8 (851-890)||(14233654-14233693)
chr8 (851-897)||(11138918-11138964)
chr8 (851-892)||(36675347-36675388)
chr8 (832-889)||(40570514-40570571)
[»] chr5 (5 HSPs)
chr5 (851-891)||(372729-372769)
chr5 (851-891)||(8725431-8725471)
chr5 (851-891)||(14206411-14206451)
chr5 (851-892)||(12878767-12878808)
chr5 (851-892)||(31284402-31284443)
[»] chr3 (5 HSPs)
chr3 (851-891)||(3484781-3484821)
chr3 (851-891)||(23906996-23907036)
chr3 (851-891)||(29057670-29057710)
chr3 (851-891)||(29846900-29846940)
chr3 (851-891)||(47683812-47683852)
[»] chr2 (5 HSPs)
chr2 (851-891)||(10472156-10472196)
chr2 (851-891)||(24727437-24727477)
chr2 (851-887)||(45202145-45202181)
chr2 (853-898)||(10550461-10550506)
chr2 (851-892)||(44411145-44411186)
[»] chr1 (7 HSPs)
chr1 (851-891)||(40139137-40139177)
chr1 (851-891)||(40596063-40596103)
chr1 (851-891)||(41507203-41507243)
chr1 (851-891)||(46903492-46903532)
chr1 (851-889)||(35030773-35030811)
chr1 (851-892)||(1690457-1690498)
chr1 (851-888)||(43612092-43612129)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 828 - 877
Target Start/End: Complemental strand, 10162013 - 10161964
Alignment:
Q  828 ttttagagaaatgatatttgtagtttgtacaaccattttcttacaacttt 877  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10162013 ttttagagaaatgatatttgtagtttgtacaaccattttcttacaacttt 10161964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 850 - 891
Target Start/End: Original strand, 40108145 - 40108186
Alignment:
Q  850 gtttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  40108145 gtttgtacaaccatttttatacaactttctctctcatactca 40108186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 6822582 - 6822542
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  6822582 tttgtacaaccattttctaacaactttttctctcatactca 6822542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Original strand, 8459625 - 8459666
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    |||||||||||| ||| | |||||||||||||||||||||||    
T  8459625 tttgtacaaccactttttaacaactttctctctcatactcat 8459666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 832 - 877
Target Start/End: Original strand, 44185172 - 44185216
Alignment:
Q  832 agagaaatgatatttgtagtttgtacaaccattttcttacaacttt 877  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||    
T  44185172 agagaaatgatatttgtag-ttgtacaaccatttttgtacaacttt 44185216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 832 - 897
Target Start/End: Complemental strand, 24020038 - 24019973
Alignment:
Q  832 agagaaatgatatttgtagtttgtacaaccattttcttacaactttctctctcatactcatgtgat 897  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||    
T  24020038 agagaaatgatatttgtagtttgtacaaccattttgtgacaactttctctctcacactcacgtgat 24019973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 664 - 721
Target Start/End: Complemental strand, 46599137 - 46599080
Alignment:
Q  664 tgtaattataattgagtgaaaaatcacatcaaataaactatgatgtatatgatgatat 721  Q
    ||||||||||||||| ||||||||||||  ||||||| ||| ||||||||||||||||    
T  46599137 tgtaattataattgattgaaaaatcacacgaaataaattattatgtatatgatgatat 46599080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 664 - 721
Target Start/End: Original strand, 46652469 - 46652526
Alignment:
Q  664 tgtaattataattgagtgaaaaatcacatcaaataaactatgatgtatatgatgatat 721  Q
    |||||||||||||||  |||||||||||| ||||||| ||||||||||| ||||||||    
T  46652469 tgtaattataattgatcgaaaaatcacatgaaataaattatgatgtataggatgatat 46652526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 851 - 892
Target Start/End: Original strand, 27384198 - 27384239
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  27384198 tttgtacaaccattttattacaactttctctctcatattcat 27384239  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 24310570 - 24310530
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24310570 tttgtacaaccatttttgtacaactttctctctcatactca 24310530  T

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Target: scaffold0155 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 3320 - 3280
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  3320 tttgtacaaccactttctcacaactttctctctcatactca 3280  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 31649 - 31609
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  31649 tttgtacaaccattttttgacaactttctctctcatactca 31609  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 891
Target Start/End: Complemental strand, 36885555 - 36885495
Alignment:
Q  831 tagagaaatgatatttgtagtttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||| |||||| | | ||||||| | || |||||||||||||||||||    
T  36885555 tagagaaatgatatttgaagtttgaatatccattttttgacgactttctctctcatactca 36885495  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 37392177 - 37392137
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  37392177 tttgtacaaccattttttgacaactttctctctcatactca 37392137  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 890
Target Start/End: Complemental strand, 14233693 - 14233654
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactc 890  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  14233693 tttgtacaactatttttttacaactttctctctcatactc 14233654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 851 - 897
Target Start/End: Original strand, 11138918 - 11138964
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcatgtgat 897  Q
    |||||||||| ||||| | ||||||||||||||||||||||| ||||    
T  11138918 tttgtacaactattttgtgacaactttctctctcatactcatatgat 11138964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Original strand, 36675347 - 36675388
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    ||||||||||||||||  ||||||||| ||||||||||||||    
T  36675347 tttgtacaaccatttttgtacaactttttctctcatactcat 36675388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 832 - 889
Target Start/End: Original strand, 40570514 - 40570571
Alignment:
Q  832 agagaaatgatatttgtagtttgtacaaccattttcttacaactttctctctcatact 889  Q
    ||||||||||||||| || |||| ||||| |||||  ||||||||||| |||||||||    
T  40570514 agagaaatgatatttatattttgcacaacaatttttgtacaactttctatctcatact 40570571  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 372769 - 372729
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  372769 tttgtacaaccattttgtgacaactttctctctcatactca 372729  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 8725471 - 8725431
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  8725471 tttgtacaaccactttattacaactttctctctcatactca 8725431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 14206411 - 14206451
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  14206411 tttgtacaaccattttttgacaactttctctctcatactca 14206451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Original strand, 12878767 - 12878808
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    |||||||||||||||| ||| |||||||||||||||| ||||    
T  12878767 tttgtacaaccattttattataactttctctctcatattcat 12878808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Complemental strand, 31284443 - 31284402
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  31284443 tttgtacatccattttgtgacaactttctctctcatactcat 31284402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 3484781 - 3484821
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  3484781 tttgtccaaccattttattacaactttctctctcatactca 3484821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 23907036 - 23906996
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  23907036 tttgtacaaccattatgttacaactttctctctcatactca 23906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 29057670 - 29057710
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  29057670 tttgtacaaccatttttgtacaactttctctctcatactca 29057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 29846940 - 29846900
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  29846940 tttgtacaaccatttttgtacaactttctctctcatactca 29846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 47683812 - 47683852
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  47683812 tttgtacaaccattttgtgacaactttctctctcatactca 47683852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 10472196 - 10472156
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  10472196 tttgtataaccattttctaacaactttctctctcatactca 10472156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 24727437 - 24727477
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24727437 tttgtacaaccattttggtacaactttctctctcatactca 24727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 887
Target Start/End: Complemental strand, 45202181 - 45202145
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcata 887  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45202181 tttgtacaaccatttttttacaactttctctctcata 45202145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 898
Target Start/End: Complemental strand, 10550506 - 10550461
Alignment:
Q  853 tgtacaaccattttcttacaactttctctctcatactcatgtgatg 898  Q
    |||||||| ||||| | ||||||||||||||||||||||| |||||    
T  10550506 tgtacaactattttttcacaactttctctctcatactcatatgatg 10550461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Complemental strand, 44411186 - 44411145
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    ||||| |||| ||||| |||||||||||||||||||||||||    
T  44411186 tttgtccaacaattttattacaactttctctctcatactcat 44411145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 40139137 - 40139177
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  40139137 tttgtacaaccattttatgacaactttctctctcatactca 40139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 40596103 - 40596063
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  40596103 tttgtacaaccattttgtgacaactttctctctcatactca 40596063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Complemental strand, 41507243 - 41507203
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  41507243 tttgtacaaccattttgtgacaactttctctctcatactca 41507203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 891
Target Start/End: Original strand, 46903492 - 46903532
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactca 891  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  46903492 tttgtacaaccattttgatacaactttctctctcatactca 46903532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 851 - 889
Target Start/End: Complemental strand, 35030811 - 35030773
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatact 889  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  35030811 tttgtacaaccatttttgtacaactttctctctcatact 35030773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 892
Target Start/End: Original strand, 1690457 - 1690498
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatactcat 892  Q
    |||||||||||||||| | |||||||| ||||||||||||||    
T  1690457 tttgtacaaccattttgtgacaactttttctctcatactcat 1690498  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 888
Target Start/End: Complemental strand, 43612129 - 43612092
Alignment:
Q  851 tttgtacaaccattttcttacaactttctctctcatac 888  Q
    |||||||||||||||| | |||||||||||||||||||    
T  43612129 tttgtacaaccattttatgacaactttctctctcatac 43612092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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