View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_20 (Length: 396)
Name: NF12040_low_20
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 380
Target Start/End: Original strand, 7457794 - 7458161
Alignment:
| Q |
14 |
agataccagaattaaaaagagaaaaaagtcatcatctgcaaacaccaacaacccttgtctctttatggaaccctaaaagataagctaattttgataattg |
113 |
Q |
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| T |
7457794 |
agataccagaattaaaaagagaaaaaagtcatcatctgcaaacaccaacaacccttgtctctttatggaaccctaaaagataagctaattttgataattg |
7457893 |
T |
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| Q |
114 |
cttacaagaacaaacaaagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctag |
213 |
Q |
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| T |
7457894 |
cttacaagaacaaacaaagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctag |
7457993 |
T |
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| Q |
214 |
tagtaccatgcnnnnnnnnnncttccaatttttgtggcaaattaattgattccacgttcttaccattaatcaatca---aactcaagacattagctagag |
310 |
Q |
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| T |
7457994 |
tagtaccatgc--ttttttttcttccaatttttgtggccaattaattgattccacgttcttaccattaatcaatcaaataactcaagacattagctagag |
7458091 |
T |
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| Q |
311 |
agaactttttagaaggacagacaaattaaaagtggtaacactttatttctttcatgtccaagattgaact |
380 |
Q |
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| T |
7458092 |
agaactttttagaaggacagacaaattaaaagtggtaacactttatttctttcatgtccaagattgaact |
7458161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 7442585 - 7442704
Alignment:
| Q |
83 |
accctaaaagataagctaattttgataattgcttacaagaacaaacaaagactagacttgatttgagtgagagctgatgaaaaagatgtctctcgttggt |
182 |
Q |
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| T |
7442585 |
accctaaaagataagctaattttgatcattgcttacaagaagaaagaaagactagacttgatttgagtgagagcagattaaaaagatgtctctcattggt |
7442684 |
T |
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| Q |
183 |
tagggatagggagtgagaaa |
202 |
Q |
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| T |
7442685 |
tagggttagggaatgagaaa |
7442704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 370
Target Start/End: Original strand, 7443761 - 7443861
Alignment:
| Q |
275 |
accattaatcaatcaaactcaagacattagctagagagaacttttt----ag-aaggacagacaaattaaaagtggtaacactttatttctttcatgtcc |
369 |
Q |
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| T |
7443761 |
accattaatcaatcaagtccaaaacattagatagagagaaccttttgtttagtaaggacagacaaattaaaagtggtcaaactttatttctttcttgtcc |
7443860 |
T |
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| Q |
370 |
a |
370 |
Q |
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| T |
7443861 |
a |
7443861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 7441943 - 7441984
Alignment:
| Q |
48 |
tctgcaaacaccaacaacccttgtctctttatggaaccctaa |
89 |
Q |
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| T |
7441943 |
tctgcaaacaccaacaaccctggtctctttagggaaccctaa |
7441984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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