View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_22 (Length: 382)
Name: NF12040_low_22
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 36345914 - 36345557
Alignment:
| Q |
8 |
caatgagaccaacaaattatattgaaatagcaagtgagtccaaattcaatgacatcaatagtagcttaggttctagaactaacacattgctactctatac |
107 |
Q |
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| T |
36345914 |
caatgagaccaacaaattatattgaaatagcaagtgagtccaaattcaatgacatcaatagtagcttaggttctagaactaacacattgctactctatac |
36345815 |
T |
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| Q |
108 |
attcattaattaaaagttgtctaaactttcttgtatcgcatagcattcactagctatagcgaaattaaacaaagcatacatcaagttatatacttactaa |
207 |
Q |
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| T |
36345814 |
attcattaattaaaagttgtctaaactttcttgtatcacatagcattcactagctatagcgaaattaaacaaagcatacatcaagttatatacttactaa |
36345715 |
T |
|
| Q |
208 |
cttaaaaataatgtttgtgttagaatagaataatatgcatctaatatggaataataacccagaaacatacatcggacacgtcacttaacgttgacacctg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36345714 |
cttaaaaataatgtttgtgttagaatagaataatatgcatctaatatggaataataacccagaaacatacatcggacacgtcacttaatgttgacacctg |
36345615 |
T |
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| Q |
308 |
taataatttaagaatgtagataaattaaatgtaaccataatcatatgtgtctttgtca |
365 |
Q |
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| T |
36345614 |
taataatttaagaatgtagataaattaaatgtaaccataaccatatgtgtctttgtca |
36345557 |
T |
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