View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_28 (Length: 346)
Name: NF12040_low_28
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 2024501 - 2024168
Alignment:
| Q |
1 |
tagctctttcatgcttatctcatttttgttattagttttttatggtcaatctcataatgtagcattttaatggaaaagaagatgtgtcgaagcttttcct |
100 |
Q |
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| T |
2024501 |
tagctctttcatgcttatctcatttctgttattatttttttacggtcaatctcataatgtagcattttaatggaaaagaagatgtgtcgaagcttttcct |
2024402 |
T |
|
| Q |
101 |
gaaagtgatcagtcagttggaactactacatgttatgcaagagggatttttattcaatttgagcatcatcaagtttgaggttagtacaattggttctatt |
200 |
Q |
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| T |
2024401 |
gaaagtgatcagtcagttggaactactacatgttatgtaagagggatttttattcaatttgagcatcatcaagtttgaggttagtacaattggttctatt |
2024302 |
T |
|
| Q |
201 |
aattctttttgttattttttggataggttagtgttggaacaatataacatgttttatgaggaaagcatggatatgtttgcagttacatatacattgtttt |
300 |
Q |
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| T |
2024301 |
aactctttttgttattttttggataggttggtgttggaacaaaataacatgttttatgaggaaagcatggatatgtttgcagttacatatacattgtttt |
2024202 |
T |
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| Q |
301 |
attttgaattcatacctttgaggattcctatgct |
334 |
Q |
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| T |
2024201 |
attttgaattcatacctttgaggattcctatgct |
2024168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 22005407 - 22005350
Alignment:
| Q |
128 |
acatgttatgcaagagggatttttattcaatttgagcatcatcaagtttgaggttagt |
185 |
Q |
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| T |
22005407 |
acatgttaagcaagatgaactttcattcagtttgagcaacatcaagtttgaggttagt |
22005350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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