View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_34 (Length: 251)
Name: NF12040_low_34
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_34 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 111569 - 111335
Alignment:
| Q |
1 |
cagaccacaaaaaactgcagacttataacaattgccacagccgcaggtagtgccaaaactaattcctcaatacagtgattaaacaaacagcaacaagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111569 |
cagaccacaaaaaactgcagacttataacaattgccacagccgcaggtagtgccaaaactaattcctcaatacagtgattaaacaaacagcaacaagcaa |
111470 |
T |
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| Q |
101 |
aattcaagaggacaagcaaaactcacaaggtgctagcaatttaacaaagatattacatcaaatacgcaccacaaagcaagcttatacacctttactatag |
200 |
Q |
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| T |
111469 |
aattcaagaggacaagcaaaactcacaaggtgctagcaatttaacaaagatattacatcaaatacgcaccacaaagcaagcttatacacctttacgatat |
111370 |
T |
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| Q |
201 |
atgtttacaaatagtatcccagttgatgatatatc |
235 |
Q |
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| T |
111369 |
atgtttataaatagtatcccagttgatgatatatc |
111335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20645446 - 20645655
Alignment:
| Q |
1 |
cagaccacaaaaaactgcagacttataacaattgccacagccgcaggtagtgccaaaactaattcctcaatacagtgattaaacaaacagcaacaagcaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20645446 |
cagaacacaaaaaactgcagacttataacaattgccacagccgcaggtagtgccaaaactaattcctcaatacagtgattaaacaaacagcaacaagcaa |
20645545 |
T |
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| Q |
101 |
aattcaagaggacaagcaaaactcacaaggtgctagcaatttaacaaagatattacatcaaatacgcaccacaaagcaagcttatacacctttactatag |
200 |
Q |
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| T |
20645546 |
aattcaagaggacaagcaaaactcacaaggtgctagcaatttaacaaagatattacatcaaatacgcaccacaaagcaagctt----acctttactatag |
20645641 |
T |
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| Q |
201 |
atgtttacaaatag |
214 |
Q |
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| T |
20645642 |
atgtttacaaatag |
20645655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1684 - 1648
Alignment:
| Q |
167 |
caccacaaagcaagcttatacacctttactatagatg |
203 |
Q |
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| T |
1684 |
caccataaagcaagcttatacacctttattatagatg |
1648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 51168686 - 51168626
Alignment:
| Q |
175 |
agcaagcttatacacctttactatagatgtttacaaatagtatcccagttgatgatatatc |
235 |
Q |
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| T |
51168686 |
agcaaccttatacaactttactataaatggtcacaaatagtatcataattgatgatatatc |
51168626 |
T |
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