View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_4 (Length: 687)
Name: NF12040_low_4
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Original strand, 2024478 - 2025141
Alignment:
| Q |
9 |
aatgagataagcatgaaagagctaccttttcattgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacactccataggcg |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2024478 |
aatgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacactccattggcg |
2024577 |
T |
|
| Q |
109 |
aattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaacataaacatgc |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024578 |
aattactctagccgtcaatgccagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaacataaacatgc |
2024677 |
T |
|
| Q |
209 |
attattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctttcaacacatataagatagagatgattacctatc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
2024678 |
attattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctttcaacacatataagatagagttgattacctctc |
2024777 |
T |
|
| Q |
309 |
ttagccatcttatccttagccatcttatctgagattcaaaaacttaacaatagatgaatcagaacttggtggatttcatgaaaactgggaacacattatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
2024778 |
ttagccatcttatccttagccatcttatctgagattcaaaaacttaacaatagatgaatcaaaacttggtggatttcatgaaaacttggaacacattatt |
2024877 |
T |
|
| Q |
409 |
tatagatataaaggattagttatgatgtgtttcagcttgtatgcattaccaatgatttcctgccaagtaatatagaagctttactataagagtattcaag |
508 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024878 |
tatagatagaaaggattagttatgatgtatttcagcttgtatgcattgccaatgatttcctgccaagtaatatagaagctttactataagagtattcaag |
2024977 |
T |
|
| Q |
509 |
ccttccatttagagaaacgtgttcatgtagaatgcaatgatgataatcatgaagaaatgcacataccaatgcactttgttacatttggcaatagcaatga |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024978 |
ccttccatttagagaaacgtgttcatgtagaatgcaatgatgataatcatgaagaaatgcacataccaatgcactttgttacatttggcaatagcaatga |
2025077 |
T |
|
| Q |
609 |
tgaccataaatcttatatccaaaagtgcaagttatatgcattagaggttatcggttgcttggcc |
672 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2025078 |
tgaccaaaaatcttatatccaaaagtgcaagttatatgcattagaagttatcggttgcttggcc |
2025141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 347 - 670
Target Start/End: Complemental strand, 10957492 - 10957183
Alignment:
| Q |
347 |
aaaacttaacaatagatgaatcagaacttggtggatttcatgaaaactgggaacacattatttatagatataaaggattagttatgatgtgtttcagctt |
446 |
Q |
| |
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||||| ||||||||||| || || |||||| || ||||||||||||||||||||||| |||||||| ||| ||||||||| ||| |||||||||||||| |
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| T |
10957492 |
aaaacataacaatagataaaacaaaacttgatgaatttcatgaaaactgggaacacaatatttataaatagcaaggattagctataatgtgtttcagctt |
10957393 |
T |
|
| Q |
447 |
gtatgcattaccaatgatttcctgccaagtaatatagaagctttactataagagtattcaagccttccatttagagaaacgtgttcatgtagaatgcaat |
546 |
Q |
| |
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|||||| | |||| | ||||| |||||||||| ||||||||| ||| | | |||||||||||||||||||||||||||| ||||||| |
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| T |
10957392 |
gtatgctt--------attttcagccaactaatatagaatctttactatgagaatgat------ttccatttagagaaacgtgttcatgtagtatgcaat |
10957307 |
T |
|
| Q |
547 |
gatgataatcatgaagaaatgcacataccaatgcactttgttacatttggcaatagcaatgatgaccataaatcttatatccaaaagtgcaagttatatg |
646 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10957306 |
gatgataatcatgaagaaatgcacataccaatgcactttgttacatttggcaatagcaatgatgaccataaatcttatatccaaaagtgcaagttacatg |
10957207 |
T |
|
| Q |
647 |
cattagaggttatcggttgcttgg |
670 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
10957206 |
catgagaggttatcggttgcttgg |
10957183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 23319814 - 23319944
Alignment:
| Q |
89 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
188 |
Q |
| |
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|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| ||||| ||||||| |||| || | ||| |
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| T |
23319814 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23319913 |
T |
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| Q |
189 |
aaacagaaacataaacatgcattattacttt |
219 |
Q |
| |
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||||| || ||||||||| |||| |||||| |
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| T |
23319914 |
aaacacgaagataaacatgaattagtacttt |
23319944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 23329981 - 23330111
Alignment:
| Q |
89 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
188 |
Q |
| |
|
|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| ||||| ||||||| |||| || | ||| |
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| T |
23329981 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23330080 |
T |
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| Q |
189 |
aaacagaaacataaacatgcattattacttt |
219 |
Q |
| |
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||||| || ||||||||| |||| |||||| |
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| T |
23330081 |
aaacacgaagataaacatgaattagtacttt |
23330111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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