View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12040_low_40 (Length: 240)
Name: NF12040_low_40
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_40 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 36706575 - 36706353
Alignment:
| Q |
18 |
attaccaccatgcattaaaatgcaatattgtcctcaacaatttgtctttgccctccatagaaatctataaaatacctctagtttcatcttatgtagagag |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36706575 |
attacgaccatgcattaaaatgcaatattgtcctcaacaattagtctttgccctccatagaaatctataaaatacctctagtttcatcttatgtagagag |
36706476 |
T |
|
| Q |
118 |
gcataactaagcataaccactttgtcaaaatggctagcagagtattaattagtcttatctcattagtcttgctttgcattatatcaacacaaggaagaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
36706475 |
gcataactaagcataaccactttgtcaaaatggctagcagagtattaattagtcttatctcattagtcttgctttgcattacaacaacacaaggaagaaa |
36706376 |
T |
|
| Q |
218 |
aacactttacacaaccaatgatt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36706375 |
aacactttacacaaccaatgatt |
36706353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 36714075 - 36714005
Alignment:
| Q |
168 |
agtcttatctcattagtcttgctttgcattatatcaacacaaggaagaaaaacactttacacaaccaatga |
238 |
Q |
| |
|
|||||||||||| |||||||| ||| |||| | || | |||||||||||||||||| |||||| |||||| |
|
|
| T |
36714075 |
agtcttatctcaatagtcttgttttacattgcagcagcccaaggaagaaaaacacttcacacaaacaatga |
36714005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 30902981 - 30903088
Alignment:
| Q |
131 |
taaccactttgtcaaaatggctagcagagtattaattagtcttatctcattagtcttgctttgcattatatcaacacaaggaagaaaaacactttacaca |
230 |
Q |
| |
|
||||||| ||||||| ||||| |||| | || || ||||||| |||||| |||||||| ||||||||| | | |||||||||||||||||||| ||||| |
|
|
| T |
30902981 |
taaccacattgtcaacatggccagcacaatactagttagtctaatctcaatagtcttgttttgcattacagtagcacaaggaagaaaaacacttcacaca |
30903080 |
T |
|
| Q |
231 |
accaatga |
238 |
Q |
| |
|
|||||||| |
|
|
| T |
30903081 |
accaatga |
30903088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University