View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12040_low_41 (Length: 239)
Name: NF12040_low_41
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 46526960 - 46527105
Alignment:
| Q |
78 |
ttgaaattgcgccaaaatgtagcagcaattgatgttgcagcaacgtctagaacatttatattgcagccacaattccaaatgcagactgtaatttagaact |
177 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46526960 |
ttgatattgcgccaaaatgtagcagcaattgatgttgcagcaacgtctagaacatttatattgcagccacaattgcaaatgcagactgtaatttagaact |
46527059 |
T |
|
| Q |
178 |
ataggattttgctaagttatcttgtgtgtctttttaaggttgatat |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46527060 |
aaaggattttgctaagttatcttgtgtgtttttttaaggttgatat |
46527105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 46526851 - 46526938
Alignment:
| Q |
1 |
ttgaaacaaaatgattcaannnnnnnnaagtggtaaaaacttgagatgaatttcaagtgacatatataccttgactgttgaaattgcg |
88 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46526851 |
ttgaaacaaaatgattcaattttttttaagtggtaaaaacttgagatgaatttcaagtgacatatataccttgactgttgaaattgcg |
46526938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University