View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_45 (Length: 220)
Name: NF12040_low_45
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 28153606 - 28153419
Alignment:
| Q |
21 |
cacaaatcagaagaaatctatcactaagtaatcaaaagagataaatcaaggataaagaaacagttttctatgcatcggggaagtattgtgaaatcattca |
120 |
Q |
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| T |
28153606 |
cacaaatcagaagaaatctatcactaagtaatcaaaagagataaatcaaggataaagaaacagttttctatgaatcggggaagtattgtgaaatcattca |
28153507 |
T |
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| Q |
121 |
gtcaattcagatgacgtaagacgactattaggtaacttggacatggggagtttcttaggacaataattagttcgtatgtactgtgatg |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153506 |
gtcaattcagatgacgtaggacgactattaggtaacttggatatggtgagtttcttaggacaataattagttcgtatgtactgtgatg |
28153419 |
T |
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