View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_low_8 (Length: 572)
Name: NF12040_low_8
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 46526166 - 46526440
Alignment:
| Q |
10 |
agcagagaggagaaagtttatattattatgcccataaaaaagaaagagtggtaagtcatacacactgacacacaattccaatacgcaacaatgttaatgt |
109 |
Q |
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| T |
46526166 |
agcagtgaggagaaagtttatattattatgcccataaaaaagaaagagttgtaagtcatacacactgacacacaattccaatacgcaacaatgtcaatgt |
46526265 |
T |
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| Q |
110 |
tcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatcttttcaatctc |
209 |
Q |
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| T |
46526266 |
tcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatcttttcaatctc |
46526365 |
T |
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| Q |
210 |
agactcagagaatgtacagcgcctagtacaagatgaaatgaaataaaattcttccaagatttgataccatatacc |
284 |
Q |
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| T |
46526366 |
agactcagagaatgtacagcgcctagtacaagatgaaatgaaataaaattctgccaagatttgataccatatacc |
46526440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 393 - 572
Target Start/End: Original strand, 46526555 - 46526734
Alignment:
| Q |
393 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttgaacttgttttgtcataagtgaaagtttcttcattattgtctacagaact |
492 |
Q |
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| T |
46526555 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttgaacttgttttgtcataagtgaaagtttcttcattattgtctagagaact |
46526654 |
T |
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| Q |
493 |
agctagcaagtacaaatgaaggaagaaactggatttgaatctcaactagcttcatgtttttcttcctcttgcaaacgtct |
572 |
Q |
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| T |
46526655 |
agctagcaagtacaaatgaaggaagaaactggacttgaatctcaactagcttcatgtttttcttcctcttgcaaaagtct |
46526734 |
T |
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