View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12041_high_4 (Length: 338)
Name: NF12041_high_4
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12041_high_4 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 12188943 - 12188648
Alignment:
| Q |
25 |
ttataaaatggatacaaattttcttgaattatattgtatcgtctaattattaattaatttacagtctccttttatatactaacatttatcagtattctta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||||||||||| ||||||||| |
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| T |
12188943 |
ttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatagaatccttttatactctaacatttatc-gtattctta |
12188845 |
T |
|
| Q |
125 |
cattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagcttagatgtttgttcatac |
224 |
Q |
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|||||||||||||| | ||||||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12188844 |
tattttaggactgaatctgacttgattggagacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcatac |
12188745 |
T |
|
| Q |
225 |
tagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaagac |
321 |
Q |
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||||||| |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12188744 |
cagatgaagactattcaagcattgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagac |
12188648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 12433371 - 12433076
Alignment:
| Q |
25 |
ttataaaatggatacaaattttcttgaattatattgtatcgtctaattattaattaatttacagtctccttttatatactaacatttatcagtattctta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||||||||||| ||||||||| |
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| T |
12433371 |
ttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatagaatccttttatactctaacatttatc-gtattctta |
12433273 |
T |
|
| Q |
125 |
cattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagcttagatgtttgttcatac |
224 |
Q |
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| T |
12433272 |
tattttaggactgaatctgacttgattggagacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcatac |
12433173 |
T |
|
| Q |
225 |
tagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaagac |
321 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12433172 |
cagatgaagactattcaagcattgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagac |
12433076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 107 - 321
Target Start/End: Complemental strand, 12177541 - 12177327
Alignment:
| Q |
107 |
catttatcagtattcttacattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagc |
206 |
Q |
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|||||||| ||||||||| |||||||||||||| | ||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||| | |
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| T |
12177541 |
catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaac |
12177442 |
T |
|
| Q |
207 |
ttagatgtttgttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatggg |
306 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12177441 |
ttagatgcttgttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatggg |
12177342 |
T |
|
| Q |
307 |
aggcataggaaagac |
321 |
Q |
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||||||||||||||| |
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| T |
12177341 |
aggcataggaaagac |
12177327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 107 - 321
Target Start/End: Complemental strand, 12421969 - 12421755
Alignment:
| Q |
107 |
catttatcagtattcttacattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagc |
206 |
Q |
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|||||||| ||||||||| |||||||||||||| | ||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||| | |
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| T |
12421969 |
catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaac |
12421870 |
T |
|
| Q |
207 |
ttagatgtttgttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatggg |
306 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12421869 |
ttagatgcttgttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatggg |
12421770 |
T |
|
| Q |
307 |
aggcataggaaagac |
321 |
Q |
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| T |
12421769 |
aggcataggaaagac |
12421755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 14404693 - 14404793
Alignment:
| Q |
221 |
atactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaaga |
320 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||||| ||||| |||||||| | ||||| || |||||||||| ||| |||||||||| ||| |||| |
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| T |
14404693 |
atacttgatgaaaactattggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaaga |
14404792 |
T |
|
| Q |
321 |
c |
321 |
Q |
| |
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| T |
14404793 |
c |
14404793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 14160 - 14060
Alignment:
| Q |
221 |
atactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaaga |
320 |
Q |
| |
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||||| ||||||||||||| |||||| |||||||| ||||| |||||||| | ||||| || |||||||||| ||| |||||||||| ||| |||| |
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| T |
14160 |
atacttgatgaaaactattggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaaga |
14061 |
T |
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| Q |
321 |
c |
321 |
Q |
| |
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| |
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|
| T |
14060 |
c |
14060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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