View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12041_low_11 (Length: 253)
Name: NF12041_low_11
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12041_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34784945 - 34785182
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgatcgtagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34784945 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgatcgtagat |
34785044 |
T |
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| Q |
101 |
taactgagttgcaattggaatatgatttggtgatgcttacaatgttccttggtaaagaaagaacaaagaaagaatgggatacacttatttacgaagcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| || || || ||||| |
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| T |
34785045 |
taactgagttgcaattggaatatgatttggtgatgcttacaatgttccttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcagg |
34785144 |
T |
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| Q |
201 |
tttcagcagctacaaaattacccccatttctggcttca |
238 |
Q |
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| T |
34785145 |
ttttagcagctacaaaattacccccatttctggcttca |
34785182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34776779 - 34777016
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgatcgtagat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
34776779 |
atattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccggggat |
34776878 |
T |
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| Q |
101 |
taactgagttgcaattggaatatgatttggtgatgcttacaatgttccttggtaaagaaagaacaaagaaagaatgggatacacttatttacgaagcagg |
200 |
Q |
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| T |
34776879 |
taactgagttgcaattggactatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcagg |
34776978 |
T |
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| Q |
201 |
tttcagcagctacaaaattacccccatttctggcttca |
238 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
34776979 |
ttttagcagctacaaaattacccccatttctggcttca |
34777016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11524342 - 11524458
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgatcgtagat |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| | ||||| | || ||||| ||| ||||||||||||||||||||||||||| | || |
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| T |
11524342 |
atattgaagaactgcaaagaagctatttcaggaaaagggaaaaaaggaaagataataatcatagacgtatcaattgatgaaacaagtgatgatcatgaat |
11524441 |
T |
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| Q |
101 |
taactgagttgcaattg |
117 |
Q |
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|||| |||||||||||| |
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| T |
11524442 |
taaccgagttgcaattg |
11524458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11467531 - 11467415
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgatcgtagat |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||| ||| | ||||| | || ||||| |||||||||||||||||||||||||| |||||| | |
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| T |
11467531 |
atattgaataacagcaaagaagctatttcaggaaaaggaaaaaaaggaaagataataatcatagacatatcaattgatgaaacaagtgaagatcgtgagt |
11467432 |
T |
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| Q |
101 |
taactgagttgcaattg |
117 |
Q |
| |
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|||| ||||| |||||| |
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| T |
11467431 |
taaccgagttacaattg |
11467415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11508127 - 11508215
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
89 |
Q |
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|||||||||||| ||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11508127 |
atattgaagaactgcaaaacagctatttcaggaaaagggaaaacgggaaaggtgataatcattgacatatcaattgatgaaacaagtga |
11508215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 11444626 - 11444551
Alignment:
| Q |
14 |
gcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
89 |
Q |
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||||| ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11444626 |
gcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgataatcattgacatatcaattgatgaaacaagtga |
11444551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11548469 - 11548557
Alignment:
| Q |
1 |
atattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattatcattgacatatcaattgatgaaacaagtga |
89 |
Q |
| |
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|||||| |||| ||||| ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
11548469 |
atattggagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgataatcattgacatatcaattgacgaaacaagtga |
11548557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 11487725 - 11487784
Alignment:
| Q |
58 |
atcattgacatatcaattgatgaaacaagtgatgatcgtagattaactgagttgcaattg |
117 |
Q |
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||||| ||| ||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
11487725 |
atcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattg |
11487784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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