View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12041_low_13 (Length: 246)

Name: NF12041_low_13
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12041_low_13
NF12041_low_13
[»] chr7 (4 HSPs)
chr7 (57-153)||(16544367-16544463)
chr7 (57-153)||(16621199-16621295)
chr7 (187-246)||(16544273-16544333)
chr7 (187-246)||(16621329-16621389)
[»] chr1 (1 HSPs)
chr1 (57-153)||(20501038-20501134)
[»] chr2 (1 HSPs)
chr2 (60-153)||(31356077-31356170)
[»] chr5 (1 HSPs)
chr5 (187-246)||(29185188-29185253)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 16544463 - 16544367
Alignment:
Q  57 gagggagtatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaacgaatattctggtttaagatttcatttcttcccttttatc 153  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  16544463 gagggagcatgagataacggaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatttcttctcttttatc 16544367  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 16621199 - 16621295
Alignment:
Q  57 gagggagtatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaacgaatattctggtttaagatttcatttcttcccttttatc 153  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  16621199 gagggagcatgagataacggaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatttcttctcttttatc 16621295  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 16544333 - 16544273
Alignment:
Q  187 acaatttcaaagaagaacaaa-taaaaatgaagaacatgaagaacaatcttcatcttctcc 246  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  16544333 acaatttcaaagaagaaaaaaatacaaatgaagaacatgaagaacaatcttcatcttctcc 16544273  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 16621329 - 16621389
Alignment:
Q  187 acaatttcaaagaagaacaaa-taaaaatgaagaacatgaagaacaatcttcatcttctcc 246  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  16621329 acaatttcaaagaagaaaaaaatacaaatgaagaacatgaagaacaatcttcatcttctcc 16621389  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 20501134 - 20501038
Alignment:
Q  57 gagggagtatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaacgaatattctggtttaagatttcatttcttcccttttatc 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| || ||||||||    
T  20501134 gagggagcatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctgattaaagatttcatttcgtctcttttatc 20501038  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 31356077 - 31356170
Alignment:
Q  60 ggagtatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaacgaatattctggtttaagatttcatttcttcccttttatc 153  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||| ||||||||    
T  31356077 ggagcatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttgtgatctcatttcttctcttttatc 31356170  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 29185188 - 29185253
Alignment:
Q  187 acaatttcaaagaagaacaaat------aaaaatgaagaacatgaagaacaatcttcatcttctcc 246  Q
    ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  29185188 acaatttcaaagaagaacaaataaaaataaaaatgaagaacatgaagaacaatcttcatcttctcc 29185253  T

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