View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12041_low_14 (Length: 241)
Name: NF12041_low_14
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12041_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34784952 - 34784730
Alignment:
| Q |
1 |
ttcaatatctttaaggataattcatcattccagtcatgcaaaacccactataacaaaatattaagatttcattaagcttccctcnnnnnnnnnnnnnnnc |
100 |
Q |
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| T |
34784952 |
ttcaatatctttaaggataattcatcattccagtcatgcaaaacccactataacaaaatattaagatttcattaagcttccctcaaaaaaaaaaaaaaaa |
34784853 |
T |
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| Q |
101 |
a-gatttcattaagccatttggttgatacaaaatatgcagcttaatttacctatttatctttattcctcatgtatgaaactctaacacaaacaccagaca |
199 |
Q |
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| T |
34784852 |
aagatttcattaagccatttggttgatacaaaatatgcagcttaatttacctatttatctttattcctcatgtatgaaactctaacacaaacaccagaca |
34784753 |
T |
|
| Q |
200 |
caacacagctttgatactaacat |
222 |
Q |
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|||||| |||||||||||||||| |
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| T |
34784752 |
caacacggctttgatactaacat |
34784730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 11548474 - 11548419
Alignment:
| Q |
3 |
caatatctttaaggataattcatcattccagtcatgcaaaacccactataacaaaa |
58 |
Q |
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| T |
11548474 |
caatatctttaaggacaattcatcattccaatcatgcaaaatccactgtaaaaaaa |
11548419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34776786 - 34776736
Alignment:
| Q |
1 |
ttcaatatctttaaggataattcatcattccagtcatgcaaaacccactat |
51 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
34776786 |
ttcaatatctttaaggattgttcatcattccaatcatgcagaacccactat |
34776736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11467524 - 11467572
Alignment:
| Q |
1 |
ttcaatatctttaaggataattcatcattccagtcatgcaaaacccact |
49 |
Q |
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|
||||||||||||||||| | |||||||| ||| |||||||||||||||| |
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| T |
11467524 |
ttcaatatctttaaggagagttcatcatcccaatcatgcaaaacccact |
11467572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 11444635 - 11444689
Alignment:
| Q |
4 |
aatatctttaaggataattcatcattccagtcatgcaaaacccactataacaaaa |
58 |
Q |
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|||||||||||||| ||||| |||||||| |||||||||| ||||| ||| |||| |
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| T |
11444635 |
aatatctttaaggacaattcgtcattccaatcatgcaaaatccactgtaaaaaaa |
11444689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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