View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12041_low_15 (Length: 216)
Name: NF12041_low_15
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12041_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14003820 - 14003612
Alignment:
| Q |
1 |
cctaaaaataagtttgagaatactagtacacacaaatttcatgaataatctttcaaaatcattaatttctgattaatattttgtacatgtattggttata |
100 |
Q |
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| T |
14003820 |
cctaaaaataagtttgagaatactagtacacacaagttgcaagaatgatctttcaaaatcattaatttctgattaatattttgtacatgtagtggttata |
14003721 |
T |
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| Q |
101 |
agtcatcaattatttattacttgacgtgtagatttctctgaagaccggagagttttcaagtctttgttttgttgtagtatttgaattttctaactgtctt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14003720 |
agtcatcaattatttattacttgacgtgttgatttctctgaagaccggagagttttcaagtct---atttgttgtagtatttgaattttctaactgtctt |
14003624 |
T |
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| Q |
201 |
tgttttcatcct |
212 |
Q |
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|||||||||||| |
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| T |
14003623 |
tgttttcatcct |
14003612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 13871127 - 13871243
Alignment:
| Q |
18 |
gaatactagtacacacaaatttcatgaataatctttcaaaatcattaatttctgattaatattttgtacatgtattggttataagtcatcaattatttat |
117 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||| |
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| T |
13871127 |
gaatactactacacacaagtttcatgaataatctttcaaaattattaatttctgattaatcttttctacatgtagtggttataagtcatcgattatttat |
13871226 |
T |
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| Q |
118 |
tacttgacgtgtagatt |
134 |
Q |
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|||||||||||| |||| |
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| T |
13871227 |
tacttgacgtgttgatt |
13871243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 14002397 - 14002299
Alignment:
| Q |
109 |
attatttattacttgacgtgtagatttctctgaagaccggagagttttcaagtctttgttttgttgtagtatttgaattttctaactgtctttgttttca |
208 |
Q |
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||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| || |||| ||||||||| |
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| T |
14002397 |
attatttattatttgacgtgttaattgctctgaagaccggagaattttcaagtctttgttttgttgtagta-ctgatttttccaattgtccttgttttca |
14002299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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