View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12041_low_4 (Length: 518)

Name: NF12041_low_4
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12041_low_4
NF12041_low_4
[»] chr4 (16 HSPs)
chr4 (24-312)||(26084935-26085223)
chr4 (24-312)||(26065210-26065519)
chr4 (21-152)||(26097207-26097338)
chr4 (383-500)||(26085294-26085411)
chr4 (24-152)||(26120497-26120625)
chr4 (191-312)||(26097383-26097504)
chr4 (24-163)||(26036562-26036701)
chr4 (24-152)||(26127154-26127282)
chr4 (195-312)||(26036754-26036868)
chr4 (400-452)||(26048361-26048413)
chr4 (400-452)||(26053542-26053594)
chr4 (400-452)||(26098702-26098754)
chr4 (191-251)||(26120685-26120745)
chr4 (468-500)||(26056142-26056174)
chr4 (468-500)||(26067804-26067836)
chr4 (468-500)||(26111716-26111748)
[»] chr1 (1 HSPs)
chr1 (57-139)||(6773916-6773998)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 26084935 - 26085223
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||| |||||||||||    
T  26084935 atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacag 26085034  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttccttccgtcaactccctcacctgctttttcagctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26085035 taccaaaaggtccagctttttcctgtttactcaatgcaagcaactttttttcagcctggtcttttccttccgtcaactccctcacctgttttttcagctc 26085134  T
Q  224 tgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaattttcctgcc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085135 tgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaattttcctgcc 26085223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 26065210 - 26065519
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26065210 atctcttgtttaactgcgattttatctaatatatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag 26065309  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttcc---------------------ttccgtcaactc 202  Q
    ||||||||||||||||||||||||||||||  ||||||||||||       | ||||||||||||||                     ||||||||||||    
T  26065310 taccaaaaggtccagctttttcctgtttacctaatgcaagcaacattttttctgcctggtcttttccttgctctgcaagctgaagcctttccgtcaactc 26065409  T
Q  203 cctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagctgaa 302  Q
     ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  26065410 actcacttgttttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattcagattctgctgaa 26065509  T
Q  303 ttttcctgcc 312  Q
     |||||||||    
T  26065510 ctttcctgcc 26065519  T

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Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 26097207 - 26097338
Alignment:
Q  21 ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26097207 ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttga 26097306  T
Q  121 cagtaccaaaaggtccagctttttcctgttta 152  Q
    ||||||||||||||||||||||||||| ||||    
T  26097307 cagtaccaaaaggtccagctttttcctcttta 26097338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 383 - 500
Target Start/End: Original strand, 26085294 - 26085411
Alignment:
Q  383 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaac 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26085294 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattactaattgaagttagagaacttcaatgatgaaaatgaaac 26085393  T
Q  483 ctgggtcttgggtacagc 500  Q
    ||||||||||||||||||    
T  26085394 ctgggtcttgggtacagc 26085411  T

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Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 26120497 - 26120625
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  26120497 atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacag 26120596  T
Q  124 taccaaaaggtccagctttttcctgttta 152  Q
    |||||||||||||||||||||||||||||    
T  26120597 taccaaaaggtccagctttttcctgttta 26120625  T

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Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 26097383 - 26097504
Alignment:
Q  191 ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca 290  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26097383 ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattca 26097482  T
Q  291 gattcagctgaattttcctgcc 312  Q
     |||||||||||||||||||||    
T  26097483 cattcagctgaattttcctgcc 26097504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 26036562 - 26036701
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| | |||||||||    
T  26036562 atctctcgtttaactgagattttctccaatatctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacag 26036661  T
Q  124 taccaaaaggtccagctttttcctgtttactcaatgcaag 163  Q
    |||||||||||||||||||||| |||||||  ||||||||    
T  26036662 taccaaaaggtccagctttttcttgtttacctaatgcaag 26036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 26127154 - 26127282
Alignment:
Q  24 atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag 123  Q
    |||||||| || ||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26127154 atctctcggtttactgcaattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag 26127253  T
Q  124 taccaaaaggtccagctttttcctgttta 152  Q
    |||||||||||||||||||||||| ||||    
T  26127254 taccaaaaggtccagctttttcctcttta 26127282  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 26036754 - 26036868
Alignment:
Q  195 gtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagatt 294  Q
    ||||||||||||||||| ||||||||||| || ||||| |||||||    ||||||||| |||||||| |||||||| |||||||||||||||||| |||    
T  26036754 gtcaactccctcacctgttttttcagctcagcgtttttgtctgatac---tgccacaaactctgatttcaacatgttgactctatctgatgattcacatt 26036850  T
Q  295 cagctgaattttcctgcc 312  Q
    ||||||| ||||||||||    
T  26036851 cagctgagttttcctgcc 26036868  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26048361 - 26048413
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26048361 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26048413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26053542 - 26053594
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26053542 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26053594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 26098702 - 26098754
Alignment:
Q  400 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 452  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  26098702 ctcacataatattgataatgatgaagaaaggtattataaaattacaagttgaa 26098754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 26120685 - 26120745
Alignment:
Q  191 ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccaca 251  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||    
T  26120685 ttccgtcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccaca 26120745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 26056142 - 26056174
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagc 500  Q
    |||||||||||||||||||||||||||||||||    
T  26056142 tgatgaaaatgaaacctgggtcttgggtacagc 26056174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 26067804 - 26067836
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagc 500  Q
    |||||||||||||||||||||||||||||||||    
T  26067804 tgatgaaaatgaaacctgggtcttgggtacagc 26067836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 26111716 - 26111748
Alignment:
Q  468 tgatgaaaatgaaacctgggtcttgggtacagc 500  Q
    |||||||||||||||||||||||||||||||||    
T  26111716 tgatgaaaatgaaacctgggtcttgggtacagc 26111748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 6773916 - 6773998
Alignment:
Q  57 tttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaaggtccagc 139  Q
    ||||||||||| |||||||| || ||||| |||  ||||  |||||| ||||| |  |||||||||||||||||||| |||||    
T  6773916 tttgccaatctagggttcactgactcatcgggaataacagaaggatttgttctgagagccttgacagtaccaaaaggaccagc 6773998  T

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