View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12041_low_6 (Length: 416)
Name: NF12041_low_6
Description: NF12041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12041_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 45381395 - 45380997
Alignment:
| Q |
1 |
ttgaaattataaaacaatgcaaatcgcaaggaaactttataagccagcctagttagaattcaaaaactaggaaaagtggaaaaagtaatatgttacatat |
100 |
Q |
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| T |
45381395 |
ttgaaattataaaacaatgcaaatcacaaggaaactttataagccagcctagttagaattcaaaaactaggaaaagtggaaaaagtaat--gttacatat |
45381298 |
T |
|
| Q |
101 |
aaatctagctcatgtttcttgtggaagagggattgattannnnnnnccttgaataaagtgttatgtataatttgcagttgtaacaactgttgaattattt |
200 |
Q |
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| T |
45381297 |
aaatctagctc--gtttcttgtggaagagggattgattatttttttccttgaataaagtgttatgtataatttgcagttgtaacaactattgaattattt |
45381200 |
T |
|
| Q |
201 |
aggtaggagtagattaattaagataggnnnnnnngaggagaatttgtgttcataacatagcaaaagtaacgagatatagatccttaacttgcacgcgaaa |
300 |
Q |
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| T |
45381199 |
aggtaggagtagattaattaagataggaaaaaaagaggagaatttgtgttcataacatagtaaaagtaacgagatatagatccttaacttgcacgcgaaa |
45381100 |
T |
|
| Q |
301 |
atagaacaatgtgagacgtgttcattgtgtgtgattctagatatgtttttagtttagaaattcttgccaaaaataatggtgtctactgctaatgttgatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45381099 |
atagaacaatgtgagacgtgttcattgtgtgtgattctagatatgtttttagtttagaaattcttgccaaaaataatggtgtctactgctaatgttgatg |
45381000 |
T |
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