View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_1 (Length: 640)
Name: NF12042_high_1
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 15 - 634
Target Start/End: Complemental strand, 50229210 - 50228592
Alignment:
| Q |
15 |
atcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacgtggagtggtgcctgctacttctttgctttgcccgggag |
114 |
Q |
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| T |
50229210 |
atcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacatggagtggtgcttgctacttctttgctttgcccgggag |
50229111 |
T |
|
| Q |
115 |
ggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtg |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229110 |
ggggtgggaaggaggaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtg |
50229011 |
T |
|
| Q |
215 |
aacccagttgacattggagagcatgctttacaattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgta |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229010 |
aacccagttgacattggagagcatgcttta-aattttgtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgta |
50228912 |
T |
|
| Q |
315 |
tttgaattatttggaaagatcataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaactccaatcatggtagtg |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228911 |
tttgaattatttggaaagaacataattcaagaattttttgtaggaaataagaatctttcaagcagctattggatcgtatcaaactccaatcatggtagtg |
50228812 |
T |
|
| Q |
415 |
tttgaacaatcatagattgatttttgttgtagattttcattcttggtggattgaagggatgattgttaatacttaatatagttttttagcagcgagaggt |
514 |
Q |
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| T |
50228811 |
tttgaacaatcatagattgatttttgttgtagattttcattcttggtggattgaagggatgattgttaatacttaatatagttttttagcagcgggaggt |
50228712 |
T |
|
| Q |
515 |
atattatagtaacagtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatgctctcattcgcaactgcaacaacgtctctcca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50228711 |
atattatagtaacagtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatgctctcatttgcaactgcaacaacgtctctcca |
50228612 |
T |
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| Q |
615 |
attcaggttgttcttctctc |
634 |
Q |
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|||||||||||||||||||| |
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| T |
50228611 |
attcaggttgttcttctctc |
50228592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 69 - 291
Target Start/End: Complemental strand, 39380885 - 39380661
Alignment:
| Q |
69 |
tttcaacgtggagtggtgcctgctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagttttta |
168 |
Q |
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||||| ||||||||| |||||| |||||||||| |||| | |||||| |||||||||||||||||| ||| | | | ||||| ||||||| |
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| T |
39380885 |
tttcaccgtggagtgttgcctgatacttctttgttttgttcaggagggtgtgggaaggaggaaacaactaattgtctttaattaagatgtgatgttttta |
39380786 |
T |
|
| Q |
169 |
gtaatgtttggaatggcgtttgtcggtggttgggta-ttgttttgtgaacccagttgacattggagagcatgctttacaa-ttttgtggtgcttacttgt |
266 |
Q |
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|||||||||||||||| |||| ||| |||||||||| |||||||| ||| ||| |||||| |||||||| |||| ||||| |||||||||||||| ||| |
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| T |
39380785 |
gtaatgtttggaatggtgtttttcgatggttgggtatttgttttgagaatccaattgacaatggagagcttgctctacaatttttgtggtgcttatatgt |
39380686 |
T |
|
| Q |
267 |
ttagaaaggaattttgtatgtgttt |
291 |
Q |
| |
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| ||||||| | ||||||||||||| |
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| T |
39380685 |
tcagaaagggaatttgtatgtgttt |
39380661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 39380630 - 39380590
Alignment:
| Q |
366 |
aatctttcaa-gcagctattggatcgtatcaaactccaatc |
405 |
Q |
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| T |
39380630 |
aatctttcaaagcagctattggatcgtatcaaacttcaatc |
39380590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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