View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_12 (Length: 278)
Name: NF12042_high_12
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 26084928 - 26084670
Alignment:
| Q |
1 |
tacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26084928 |
tacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgat |
26084829 |
T |
|
| Q |
101 |
gagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctg |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084828 |
gagattgcaaaattttgtgaatctaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctg |
26084729 |
T |
|
| Q |
201 |
tctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084728 |
tctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
26084670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 26120490 - 26120232
Alignment:
| Q |
1 |
tacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaat |
100 |
Q |
| |
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|||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26120490 |
tacccttgcaaactcaaatgtgaaagagatcctcgagatctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgat |
26120391 |
T |
|
| Q |
101 |
gagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctg |
200 |
Q |
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||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |
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| T |
26120390 |
gagattgcaaagttttgtgaatcgaatcaagtcccattttacaaaagagacccggataatggtattgatactgttggaaaaattccaaacggcgaggctg |
26120291 |
T |
|
| Q |
201 |
tctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
259 |
Q |
| |
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||||| | || ||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26120290 |
tctccagtctcaaattccgtattctaagagaatttttgcagttgggatacagtgttctt |
26120232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 26097203 - 26096945
Alignment:
| Q |
1 |
tacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26097203 |
tacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgat |
26097104 |
T |
|
| Q |
101 |
gagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctg |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||| | ||||| |
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| T |
26097103 |
gagattgcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctg |
26097004 |
T |
|
| Q |
201 |
tctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
259 |
Q |
| |
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||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26097003 |
tctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
26096945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 26065201 - 26064945
Alignment:
| Q |
3 |
cccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatga |
102 |
Q |
| |
|
||||||||||||| ||||| |||| || || || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
26065201 |
cccttgcaaactccaatgttaaggagatcctggaagtctggttcactaatatcaagagagttggtatatctaattatctagttgttgccttagacgatga |
26065102 |
T |
|
| Q |
103 |
gattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtc |
202 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| | ||||||| |
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| T |
26065101 |
gattgcaaagttttgtgaattgaatcaagtcccattttacaaaagagacccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtc |
26065002 |
T |
|
| Q |
203 |
tccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
259 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
26065001 |
tccgggcttaaatttcgtattctaagggaatttttgcagctgggatatagcgttctt |
26064945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 26127145 - 26126889
Alignment:
| Q |
3 |
cccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatga |
102 |
Q |
| |
|
||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
26127145 |
cccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatcaagagagtcggtatacctaattatttagttgttgccttagacgatga |
26127046 |
T |
|
| Q |
103 |
gattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtc |
202 |
Q |
| |
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||| |||| |||||||||| ||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||| | | | ||||||| |
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| T |
26127045 |
aatttcaaagttttgtgaatcaaataaagtcccgttttacaaaagagacccggatgatgctattgatactgttggaaaaataggagggagagcggctgtc |
26126946 |
T |
|
| Q |
203 |
tccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
259 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
26126945 |
tctgggcttaaatttcgtattttaagagaatttttgcagttgggatatagcgttctt |
26126889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 26036551 - 26036298
Alignment:
| Q |
5 |
cttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgaga |
104 |
Q |
| |
|
|||||||| || |||||||||| ||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
26036551 |
cttgcaaattccaatgtgaaggagatgttagaggtctggttctcaaatatcaagagagttggtatatctaattatctagttgttgctttagacgatgaga |
26036452 |
T |
|
| Q |
105 |
ttgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggg------gc |
198 |
Q |
| |
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|| |||||||||||||| ||| |||||||||||||| |||||||||| ||| ||| |||||| || |||||||| ||| || ||| || |
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| T |
26036451 |
tttcaaaattttgtgaaacaaatcaagtcccattttacaaaagagacccagatgatggtattgacaccattggaaaa----caa--ggagggaaccatgc |
26036358 |
T |
|
| Q |
199 |
tgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttct |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26036357 |
tgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatggtgttct |
26036298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
36 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
96 |
Q |
| |
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|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
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| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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