View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_13 (Length: 278)
Name: NF12042_high_13
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 27440670 - 27440413
Alignment:
| Q |
5 |
aagtatcacaggaaatattttgcgaaagaattacaataaattattggatactataagttttgggaaatatctgacgatacgtgtatgatgctcttccatt |
104 |
Q |
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| T |
27440670 |
aagtatcgaaggaaatattttgcgaaagaattacaataaattattggatactataagttttgggaaatatctgacgatacgtgtatgatgctcttccatt |
27440571 |
T |
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| Q |
105 |
ttgaagcaactgaggcataatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggaga |
204 |
Q |
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| T |
27440570 |
ttgaagcaactgaggcataatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggaga |
27440471 |
T |
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| Q |
205 |
gctttttgataccaaagttgctgacaccaatagactttgctatgcccaatctataaca |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27440470 |
gctttttgataccaaagttgctgacaccaatagactttgctatgcccaatctataaca |
27440413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 123 - 263
Target Start/End: Complemental strand, 27429020 - 27428880
Alignment:
| Q |
123 |
aatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttgataccaaagt |
222 |
Q |
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| T |
27429020 |
aatgaatcaaatcaactagtgctaaattcttttacctgattaactgcaggagcgatttcggcattttctaagagtatggagagctttttgacaccaaagt |
27428921 |
T |
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| Q |
223 |
tgctgacaccaatagactttgctatgcccaatctataacat |
263 |
Q |
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| T |
27428920 |
tactgacaccaatagactttgctaggcccaatctataacat |
27428880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 27443442 - 27443334
Alignment:
| Q |
154 |
atacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttgataccaaagttgctgacaccaatagactttgctatgcccaa |
253 |
Q |
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||||||| |||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
27443442 |
atacctgattaactgcaggatagattttggcactttcgaagagcatggagagctttttgataccaaagttgctaacaccaatagactttgctaagcccaa |
27443343 |
T |
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| Q |
254 |
tctataaca |
262 |
Q |
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||||||||| |
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| T |
27443342 |
tctataaca |
27443334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 26933160 - 26933215
Alignment:
| Q |
202 |
agagctttttgataccaaagttgctgacaccaatagactttgctatgcccaatcta |
257 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||| ||| |||||| |
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| T |
26933160 |
agagctttttgatgccaaagttgctaacaccaatagacttggctaagcctaatcta |
26933215 |
T |
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