View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_21 (Length: 203)
Name: NF12042_high_21
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_21 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27440732 - 27440934
Alignment:
| Q |
1 |
aacgagcatcatacaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccat |
100 |
Q |
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| T |
27440732 |
aacgagcatcatacaaattcatatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccat |
27440831 |
T |
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| Q |
101 |
gtgagtgcatggtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaaga |
200 |
Q |
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| T |
27440832 |
gtgagtgcatggtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaaga |
27440931 |
T |
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| Q |
201 |
aga |
203 |
Q |
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||| |
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| T |
27440932 |
aga |
27440934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 27443574 - 27443750
Alignment:
| Q |
25 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactagga |
124 |
Q |
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| T |
27443574 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaactcagagaattctgcaagcagaaaggaattcatgtgagtgcatggtcaccactagga |
27443673 |
T |
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| Q |
125 |
ggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaa |
201 |
Q |
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| T |
27443674 |
ggatacaaactaagttttggttcgcctgcagtgatggagaattcaattctgcgagaaattgctgaggctagaaagaa |
27443750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 27429294 - 27429485
Alignment:
| Q |
12 |
tacaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatg |
111 |
Q |
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| T |
27429294 |
tacaaatttttgtttggatttaggtggagatgaacccatcatggcaacaggggaaactaagagaattctgcaagcagaaaggaatccatgtgagtgcatg |
27429393 |
T |
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| Q |
112 |
gtcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaaga |
203 |
Q |
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| T |
27429394 |
gtcaccactaggaggatacaaactaagttggggttcgcctacagtgatggagaatccaattctgcacgaaattgcagaggctagaaagaaga |
27429485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 26911221 - 26911095
Alignment:
| Q |
21 |
ttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccact |
120 |
Q |
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|||||||||||||||| |||||||| |||| |||||||| | ||||| || |||||||||| | |||||||||| |||||| |||||||||||||| | |
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| T |
26911221 |
ttatttggatttaggtagaaatgaatccatcttggcatcaagaaaaactcagggaattctgcatgaagaaaggaattcatgtgtgtgcatggtcaccatt |
26911122 |
T |
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| Q |
121 |
aggaggctacaaactaagttggggttc |
147 |
Q |
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|||| |||||| || ||||||||| |
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| T |
26911121 |
gggagcatacaaagtattttggggttc |
26911095 |
T |
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