View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12042_high_5 (Length: 492)

Name: NF12042_high_5
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12042_high_5
NF12042_high_5
[»] chr4 (43 HSPs)
chr4 (47-446)||(24420086-24420484)
chr4 (47-314)||(24471142-24471402)
chr4 (110-438)||(24475730-24476065)
chr4 (77-328)||(24406228-24406487)
chr4 (352-446)||(24471408-24471502)
chr4 (70-185)||(24406481-24406596)
chr4 (70-204)||(24420423-24420557)
chr4 (70-204)||(24471069-24471203)
chr4 (46-114)||(24476725-24476793)
chr4 (69-204)||(24420807-24420942)
chr4 (46-204)||(24470949-24471107)
chr4 (97-204)||(24421095-24421202)
chr4 (61-200)||(24421339-24421478)
chr4 (46-204)||(24420519-24420677)
chr4 (69-200)||(24421243-24421374)
chr4 (61-200)||(24470245-24470384)
chr4 (69-200)||(24470445-24470576)
chr4 (46-188)||(24470518-24470660)
chr4 (69-194)||(24470781-24470905)
chr4 (74-204)||(24476731-24476855)
chr4 (69-194)||(24470637-24470762)
chr4 (61-190)||(24477630-24477759)
chr4 (70-197)||(24420622-24420749)
chr4 (73-204)||(24420903-24421034)
chr4 (69-200)||(24470349-24470480)
chr4 (70-197)||(24470877-24471004)
chr4 (69-200)||(24477476-24477607)
chr4 (67-138)||(24482187-24482258)
chr4 (73-203)||(24420568-24420698)
chr4 (78-203)||(24421192-24421317)
chr4 (78-203)||(24470598-24470723)
chr4 (78-197)||(24477431-24477550)
chr4 (46-108)||(24420327-24420389)
chr4 (91-204)||(24470707-24470820)
chr4 (103-188)||(24477074-24477159)
chr4 (70-194)||(24420721-24420845)
chr4 (70-194)||(24420961-24421085)
chr4 (98-138)||(24481447-24481487)
chr4 (58-117)||(24421491-24421550)
chr4 (58-117)||(24470173-24470232)
chr4 (146-204)||(24406558-24406616)
chr4 (46-200)||(24470710-24470864)
chr4 (82-203)||(24470937-24471058)
[»] chr2 (11 HSPs)
chr2 (49-196)||(41900272-41900419)
chr2 (69-179)||(41899953-41900063)
chr2 (88-187)||(41900089-41900188)
chr2 (70-197)||(41900511-41900638)
chr2 (49-204)||(41899832-41899987)
chr2 (69-203)||(41899881-41900015)
chr2 (45-114)||(41899826-41899895)
chr2 (69-148)||(41900368-41900447)
chr2 (46-196)||(41900464-41900614)
chr2 (142-203)||(41900553-41900614)
chr2 (116-204)||(41900360-41900448)
[»] scaffold0879 (6 HSPs)
scaffold0879 (97-204)||(4572-4679)
scaffold0879 (69-194)||(4496-4621)
scaffold0879 (97-200)||(4428-4531)
scaffold0879 (73-197)||(4740-4864)
scaffold0879 (78-203)||(4457-4582)
scaffold0879 (70-194)||(4689-4813)
[»] chr1 (20 HSPs)
chr1 (45-110)||(52821254-52821319)
chr1 (49-200)||(52821356-52821507)
chr1 (142-200)||(11879349-11879407)
chr1 (58-204)||(11904893-11905039)
chr1 (64-113)||(11881946-11881995)
chr1 (64-113)||(11891180-11891229)
chr1 (70-185)||(11879442-11879557)
chr1 (45-128)||(52821674-52821757)
chr1 (166-204)||(11881952-11881990)
chr1 (166-204)||(11891186-11891224)
chr1 (143-197)||(11902063-11902117)
chr1 (64-113)||(11904995-11905044)
chr1 (79-128)||(11905058-11905107)
chr1 (49-110)||(52821302-52821363)
chr1 (121-197)||(11879445-11879521)
chr1 (61-113)||(11879934-11879986)
chr1 (61-113)||(11880174-11880226)
chr1 (61-113)||(11880270-11880322)
chr1 (61-113)||(11902674-11902726)
chr1 (61-113)||(11902770-11902822)
[»] scaffold1918 (1 HSPs)
scaffold1918 (61-113)||(16-68)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 47 - 446
Target Start/End: Complemental strand, 24420484 - 24420086
Alignment:
Q  47 cttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttc 146  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24420484 cttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatggctataagtcaccgccacctccttcgccttc 24420385  T
Q  147 accaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24420384 accaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctat 24420285  T
Q  247 taagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgttaataaaaaagtctatgc 346  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24420284 taagcttccggctattatttg-aaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgttaataaaaaagtctatgc 24420186  T
Q  347 tttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24420185 tttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttttctcctttagttgttttt 24420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 47 - 314
Target Start/End: Original strand, 24471142 - 24471402
Alignment:
Q  47 cttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttc 146  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24471142 cttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataggtcaccgccacctccttcgccttc 24471241  T
Q  147 accaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctat 246  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  24471242 accaccgcctccttatatttacaagt------ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctat 24471335  T
Q  247 taagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgt 314  Q
    ||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||    
T  24471336 taagcttccggctatcatttg-aaattttttcaatgaattatattcagcattgttgtggttaatttgt 24471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 110 - 438
Target Start/End: Complemental strand, 24476065 - 24475730
Alignment:
Q  110 catatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatca 209  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| ||||| |||||||||| ||||||||||| |||    
T  24476065 catatgtctataagtcaccgccacctcctaccccttcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctca 24475966  T
Q  210 tccctaccactacaactcacccccgcctcccatctattaa-gcttccggcta---ttatttgtnnnnnnnntcaatgaattatattcagcattgttgtgg 305  Q
    | || | | |||||||||||||||||||||| |||||||| |||||||||||   |||||||         |||| |||||||||||||||||||| |||    
T  24475965 ttccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttg-aaattttttcaaagaattatattcagcattgttctgg 24475867  T
Q  306 ttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattttgattcaaatgcatctgtgcatgcatggt 401  Q
    |||||||||||  |||||||||| ||||||| || | ||| |  |||| |||||||||||||   |||||| | ||||| ||||  |||||||| |||||    
T  24475866 ttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaagtgcaattgtgcatgtatggt 24475767  T
Q  402 gttaattcataagtttgtatttatttatctcctttag 438  Q
    ||||||||||||||  ||||||||  |||||||||||    
T  24475766 gttaattcataagtcagtatttatcaatctcctttag 24475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 77 - 328
Target Start/End: Complemental strand, 24406487 - 24406228
Alignment:
Q  77 ctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcc 176  Q
    ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| ||||    
T  24406487 ctccacctccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactcc 24406388  T
Q  177 acctc------caccatctccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctat---tatttg 267  Q
    |||||      |||||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||||||   |||||||||| ||| |||    | |||    
T  24406387 acctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttg 24406288  T
Q  268 tnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgt 328  Q
             |||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  24406287 -aaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 352 - 446
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
Q  352 agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 446  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24471408 agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt 24471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 24406596 - 24406481
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    |||||||||||||| ||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| ||||    
T  24406596 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctaca 24406497  T
Q  170 agtctccacctccacc 185  Q
    || |||||||||||||    
T  24406496 agactccacctccacc 24406481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 24420557 - 24420423
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||  |||||||||| ||||| ||    ||||    
T  24420557 tacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagtcacctccacctccttcagcttcaccacctcctccatactactaca 24420458  T
Q  170 agtctccacctccaccatctccatcacctcctcca 204  Q
    | |||||||||||||| ||||||||||||||||||    
T  24420457 aatctccacctccaccttctccatcacctcctcca 24420423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 24471069 - 24471203
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||||||||| || ||||| ||||| |||||||||||||| |||||| |||||||||| |||||||||||  |||||||||| ||||| ||    ||||    
T  24471069 tacaaatctcctcccccaccatctccttcacctcctccaccctatgtccataagtcacctccacctccttcagcttcaccacctcctccatactactaca 24471168  T
Q  170 agtctccacctccaccatctccatcacctcctcca 204  Q
    | |||||||||||||| ||||||||||||||||||    
T  24471169 aatctccacctccaccttctccatcacctcctcca 24471203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 24476793 - 24476725
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatat 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24476793 ccttcaccacctcctcctgactactacaaatctccacctccaccttctccatcacctcctccaccatat 24476725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 24420942 - 24420807
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||||    
T  24420942 ctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttac 24420843  T
Q  169 aagtctccacctccaccatctccatcacctcctcca 204  Q
    ||||| ||||| |||||||| || || |||||||||    
T  24420842 aagtccccacccccaccatcaccttctcctcctcca 24420807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 24470949 - 24471107
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 145  Q
    ||||||||||||||||| ||   |||||| || ||||| ||||| || || ||||| || || ||||| ||||||||||| || || |||||||| ||||    
T  24470949 ccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctcctt 24471048  T
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    |||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||||||||||    
T  24471049 caccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctcca 24471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 24421202 - 24421095
Alignment:
Q  97 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 196  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  24421202 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 24421103  T
Q  197 ctcctcca 204  Q
    | ||||||    
T  24421102 cccctcca 24421095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 24421478 - 24421339
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 160  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| || |||||||| || || || || || ||||| |    
T  24421478 ccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccat 24421379  T
Q  161 atatttacaagtctccacctccaccatctccatcacctcc 200  Q
    || | |||||||| |||||||| |||||||| ||||||||    
T  24421378 atgtctacaagtcaccacctcctccatctccttcacctcc 24421339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 24420677 - 24420519
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 145  Q
    ||||||||||| ||||| ||   |||||| || ||||| ||||| || || ||||| || || ||||||||||||||||| || || |||||||| ||||    
T  24420677 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctcctt 24420578  T
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    |||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||| ||||||    
T  24420577 caccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctcca 24420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 24421374 - 24421243
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| || |||||||| || ||||| |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | |||    
T  24421374 ctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24421275  T
Q  169 aagtctccacctccaccatctccatcacctcc 200  Q
    |||||||| ||||||||||| || ||||||||    
T  24421274 aagtctcctcctccaccatcaccctcacctcc 24421243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 24470245 - 24470384
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 160  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| || |||||||| || || || || || ||||| |    
T  24470245 ccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccat 24470344  T
Q  161 atatttacaagtctccacctccaccatctccatcacctcc 200  Q
    || | |||||||| |||||||| ||||| || ||||||||    
T  24470345 atgtctacaagtcaccacctcctccatcaccttcacctcc 24470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 24470445 - 24470576
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| ||||| ||||||||  | || |||||||| || || ||||| || |||||||| ||||||||||| |||||||| || ||||| ||| | |||    
T  24470445 ctacaagtctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctac 24470544  T
Q  169 aagtctccacctccaccatctccatcacctcc 200  Q
    ||||| |||||||| |||||||| ||||||||    
T  24470545 aagtcaccacctcctccatctccttcacctcc 24470576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 24470518 - 24470660
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 145  Q
    |||||||| |||||||| ||   |||||| || |||||||| || ||||| |||||||| ||||||||||||||||||   || ||||| || || || |    
T  24470518 ccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccat 24470617  T
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatc 188  Q
    ||||||| ||||| ||| | ||||||||||| |||||||||||    
T  24470618 caccaccacctccatatgtctacaagtctcctcctccaccatc 24470660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 24470781 - 24470905
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||| || ||||| || || || || || || || ||| |||||    
T  24470781 ctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccacctcctccatctccctctcctcc-ccaccatatgtttac 24470879  T
Q  169 aagtctccacctccaccatctccatc 194  Q
    ||||| ||||||||||| ||||||||    
T  24470880 aagtcaccacctccaccgtctccatc 24470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 24476855 - 24476731
Alignment:
Q  74 aatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtc 173  Q
    |||||||||| ||||| ||||| |||||||| ||| | ||||||||||||||||  |||||||      |||||||||| |||||| |    ||||| ||    
T  24476855 aatctccacccccaccatctccttcacctcccccatcctatgtctataagtcacatccacctc------cttcaccacctcctcctgactactacaaatc 24476762  T
Q  174 tccacctccaccatctccatcacctcctcca 204  Q
    |||||||||||| ||||||||||||||||||    
T  24476761 tccacctccaccttctccatcacctcctcca 24476731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 24470637 - 24470762
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| ||||| |||||||| || || || ||||| ||||| ||| | |||||||| || |||||||| || |||||||| || ||||| ||| | |||    
T  24470637 ctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctac 24470736  T
Q  169 aagtctccacctccaccatctccatc 194  Q
    ||||| |||||||||||||| |||||    
T  24470737 aagtcaccacctccaccatccccatc 24470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 24477759 - 24477630
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 160  Q
    ||||| ||||||| || |||||||||||  || |||||||| || ||||| |||||||||||||| || ||||| || || || |||||||| ||||| |    
T  24477759 ccttattactacatatatccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccat 24477660  T
Q  161 atatttacaagtctccacctccaccatctc 190  Q
    || | |||||||| ||||| || |||||||    
T  24477659 atgtgtacaagtccccaccacctccatctc 24477630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 24420749 - 24420622
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| || ||||||||||| |||||||| || || || ||||| || ||||| || || || || || || ||||||||||||||||| ||||| ||||    
T  24420749 tacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctaca 24420650  T
Q  170 agtctccacctccaccatctccatcacc 197  Q
    |||| ||||| |||||||| || |||||    
T  24420649 agtcaccaccaccaccatccccttcacc 24420622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 24421034 - 24420903
Alignment:
Q  73 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 172  Q
    ||||| ||||| || || |||||||| || ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |    
T  24421034 aaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaat 24420935  T
Q  173 ctccacctccaccatctccatcacctcctcca 204  Q
    ||||||| |||||||| || ||||| ||||||    
T  24420934 ctccacccccaccatcaccttcaccccctcca 24420903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 24470349 - 24470480
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| || |||||||| || || || |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | |||    
T  24470349 ctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24470448  T
Q  169 aagtctccacctccaccatctccatcacctcc 200  Q
    |||||||| ||||||||| | || ||||||||    
T  24470449 aagtctcctcctccaccaacaccctcacctcc 24470480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 24470877 - 24471004
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| || ||||||||||| |||||||| || || || ||||| || ||||||||||| || ||  | || ||||||||||| ||||| ||||| ||||    
T  24470877 tacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctaca 24470976  T
Q  170 agtctccacctccaccatctccatcacc 197  Q
    |||| ||||| |||||||| || |||||    
T  24470977 agtcaccaccaccaccatccccttcacc 24471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 24477607 - 24477476
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    ||||||||| |||||||| || ||||| |  ||||| ||||||||||||||||||   || ||||| || || || ||||| || ||||| ||| | |||    
T  24477607 ctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctac 24477508  T
Q  169 aagtctccacctccaccatctccatcacctcc 200  Q
    ||||| |||||||| |||||||| ||||||||    
T  24477507 aagtcaccacctcctccatctccttcacctcc 24477476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 24482258 - 24482187
Alignment:
Q  67 tactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcct 138  Q
    ||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||||| |||||||||    
T  24482258 tactacaaatctccaccaccaccatctccatcaccaccacctccttatgtctataaatcaccaccacctcct 24482187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 24420698 - 24420568
Alignment:
Q  73 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 172  Q
    |||||||| |||||||| ||||| ||||| || || |||||| |||| |||||||| ||||| || || ||||||||||| ||||| ||| | || ||||    
T  24420698 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagt 24420599  T
Q  173 ctccacctccaccatctccatcacctcctcc 203  Q
    | || ||||| || ||||| ||||| |||||    
T  24420598 cccctcctcctccttctccttcaccccctcc 24420568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 24421317 - 24421192
Alignment:
Q  78 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 177  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || || ||||| || || |||||| |||||||||| |||    
T  24421317 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcacca 24421218  T
Q  178 cctccaccatctccatcacctcctcc 203  Q
    || || ||||| || |||||||||||    
T  24421217 ccacctccatccccttcacctcctcc 24421192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 24470598 - 24470723
Alignment:
Q  78 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 177  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || ||||| || || || || |||||||| ||||| |||    
T  24470598 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgcca 24470697  T
Q  178 cctccaccatctccatcacctcctcc 203  Q
    || || |||||||| |||||||||||    
T  24470698 ccacctccatctccttcacctcctcc 24470723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 24477550 - 24477431
Alignment:
Q  78 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 177  Q
    |||||| ||||| ||||| |||||||| || ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | ||||||  |||     
T  24477550 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaagagtcct 24477451  T
Q  178 cctccaccatctccatcacc 197  Q
    |||| ||| |||||||||||    
T  24477450 cctctaccttctccatcacc 24477431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 24420389 - 24420327
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctcca 108  Q
    ||||||||||| ||||||||    ||||| |||||||||||||| ||||||||||||||||||    
T  24420389 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 24420327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 24470707 - 24470820
Alignment:
Q  91 tctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctc 190  Q
    ||||| ||||||||||| ||||||||||| |||||||| || || || || || || ||||| || || ||| | ||||| |||||||| |||||||| |    
T  24470707 tctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcac 24470806  T
Q  191 catcacctcctcca 204  Q
    | ||||| ||||||    
T  24470807 cttcaccccctcca 24470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 24477159 - 24477074
Alignment:
Q  103 cctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 188  Q
    ||||| ||||||||||||||| |||| || ||||| || || || ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  24477159 cctcctccatatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatc 24477074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 24420845 - 24420721
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| || ||||| ||||| || || || ||||||||||| ||| | |||||||| || |||||||| || || || || || || || ||| ||||||    
T  24420845 tacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctccatctccctctcctcccccaccatatgtttaca 24420746  T
Q  170 agtctccacctccaccatctccatc 194  Q
    |||| ||||||||||| ||||||||    
T  24420745 agtcaccacctccaccgtctccatc 24420721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 24421085 - 24420961
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| ||||| |||||||| || || || ||||| ||||||||||| ||||| ||||| ||||| || || || || || || || || ||| | ||||    
T  24421085 tacaagtctcctcctccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctaca 24420986  T
Q  170 agtctccacctccaccatctccatc 194  Q
    |||| |||||||||||||| |||||    
T  24420985 agtcaccacctccaccatccccatc 24420961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 24481487 - 24481447
Alignment:
Q  98 cacctcctccaccatatgtctataagtcaccgccacctcct 138  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  24481487 cacctccaccaccatatgtctacaagtcaccgccacctcct 24481447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 24421550 - 24421491
Alignment:
Q  58 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtc 117  Q
    ||||| || ||||||||||| |||||||||||||||||||| || || || |||||||||    
T  24421550 cctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtc 24421491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 24470173 - 24470232
Alignment:
Q  58 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtc 117  Q
    ||||| || ||||||||||| |||||||||||||||||||| || || || |||||||||    
T  24470173 cctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtc 24470232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 24406616 - 24406558
Alignment:
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    ||||||| || || ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  24406616 caccaccaccaccgtatgtttacaaatctccacccccaccatctccttcacctcctcca 24406558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 24470710 - 24470864
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 145  Q
    |||||||| |||||||| ||   |||||| || ||||||||||| || ||||| || || |||||||||||||| || || || || || || || ||||    
T  24470710 ccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcacctt 24470809  T
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 200  Q
    |||| || || || ||| | || ||||| |||||||| |||||||| || |||||    
T  24470810 caccccctccaccatatgtatataagtcaccacctcctccatctccctctcctcc 24470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 24470937 - 24471058
Alignment:
Q  82 cctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctc 181  Q
    |||||| | ||||| ||||| ||||| |||||| |||| |||||||| ||||| || || ||||||||||| ||||| ||  | || ||||| || ||||    
T  24470937 cctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctc 24471036  T
Q  182 caccatctccatcacctcctcc 203  Q
    | || ||||| ||||| |||||    
T  24471037 ctccttctccttcaccccctcc 24471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 41900419 - 41900272
Alignment:
Q  49 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 148  Q
    ||||||||||| |||||    ||||| || ||||| || |||||||| |||| |||||||||||||||||| || || || |||||||| || |||||||    
T  41900419 tcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcac 41900320  T
Q  149 caccgcctccttatatttacaagtctccacctccaccatctccatcac 196  Q
    |||| ||||| ||| | ||||||||||| |||||||||||| ||||||    
T  41900319 caccacctccatatgtctacaagtctcctcctccaccatctgcatcac 41900272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 41900063 - 41899953
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| ||||||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||| |||||    
T  41900063 ctacaactctccacctcctccctctccttcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttac 41899964  T
Q  169 aagtctccacc 179  Q
    ||||| |||||    
T  41899963 aagtccccacc 41899953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 41900188 - 41900089
Alignment:
Q  88 ccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccat 187  Q
    |||||||| |||||||||||||| |||||||| || || || |||||||| || ||||||||||||||||| ||| ||||||| ||||| || |||||||    
T  41900188 ccttctccctcacctcctccaccgtatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 41900638 - 41900511
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    |||||||||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| |||||||| || |||||||| || || || ||| | ||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctaca 41900539  T
Q  170 agtctccacctccaccatctccatcacc 197  Q
    | ||||| || || || |||||||||||    
T  41900538 aatctcctccacctccctctccatcacc 41900511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 41899987 - 41899832
Alignment:
Q  49 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 148  Q
    |||||||||||||| ||    ||||| || ||||| || ||||| || ||||| ||||| |||||||  || ||||| || || || || || |||||||    
T  41899987 tcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtacaagtctcctcccccaccatcaccttcac 41899888  T
Q  149 caccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    | || ||||| ||| |||||||||||||||||||||| ||| | ||||||||||||    
T  41899887 cgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctcca 41899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 41900015 - 41899881
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| || ||||| |||||||| || ||||| ||||| |||||||| || ||||| || ||||| ||||| || ||||| || ||||| |||   |||    
T  41900015 ctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtac 41899916  T
Q  169 aagtctccacctccaccatctccatcacctcctcc 203  Q
    |||||||| || |||||||| || ||||| |||||    
T  41899915 aagtctcctcccccaccatcaccttcaccgcctcc 41899881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 41899895 - 41899826
Alignment:
Q  45 accttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatat 114  Q
    ||||||||| |||||||| ||    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41899895 accttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccaccatat 41899826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 41900447 - 41900368
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 148  Q
    |||||| || ||||| ||||| || |||||||| |||||||| ||| | || |||||||| ||||||||||| |||||||    
T  41900447 ctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcac 41900368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 41900614 - 41900464
Alignment:
Q  46 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 145  Q
    |||||||||||||| |||||    || || || ||||| || || ||||| ||||||||||| ||||||||||| || || || |||||||| || || |    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctacaaatctcctccacctccctctccat 41900515  T
Q  146 caccaccgcctccttatatttacaagtctccacctccaccatctccatcac 196  Q
    ||||||  |||   ||| | || |||||||| |||||||||||| ||||||    
T  41900514 caccacaacctaagtatgtctataagtctcctcctccaccatctgcatcac 41900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 41900614 - 41900553
Alignment:
Q  142 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcc 203  Q
    ||||||||||| || ||||||||||| ||||| ||||| || || ||||| |||||||||||    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctcc 41900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 41900448 - 41900360
Alignment:
Q  116 tctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    |||| ||||| || ||||| || || || |||||||| || ||||||||||||||||| ||||| || || ||||| |||| |||||||    
T  41900448 tctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctcca 41900360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 4572 - 4679
Alignment:
Q  97 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 196  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  4572 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 4671  T
Q  197 ctcctcca 204  Q
    | ||||||    
T  4672 cccctcca 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 4496 - 4621
Alignment:
Q  69 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 168  Q
    |||||| ||||| |||||||| || || |||||||| ||||||||||| || |||||||| |||||||| || |||||||| || ||||| ||| | |||    
T  4496 ctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctac 4595  T
Q  169 aagtctccacctccaccatctccatc 194  Q
    ||||| ||||| |||||||| |||||    
T  4596 aagtcaccaccaccaccatccccatc 4621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 4428 - 4531
Alignment:
Q  97 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 196  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||    
T  4428 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcac 4527  T
Q  197 ctcc 200  Q
    ||||    
T  4528 ctcc 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 4740 - 4864
Alignment:
Q  73 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 172  Q
    ||||| ||||| || || |||||||| || ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |    
T  4740 aaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaat 4839  T
Q  173 ctccacctccaccatctccatcacc 197  Q
    ||||||| |||||||| || |||||    
T  4840 ctccacccccaccatcaccttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 4457 - 4582
Alignment:
Q  78 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 177  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || || ||||| || || || ||| |||||||||| |||    
T  4457 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcacca 4556  T
Q  178 cctccaccatctccatcacctcctcc 203  Q
    || || ||||| || |||||||||||    
T  4557 ccacctccatccccttcacctcctcc 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 4689 - 4813
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| ||||| |||||||| || || || ||||| ||||||||||| ||||| ||||| ||||| || || || || || || || || ||| | ||||    
T  4689 tacaagtctcctcctccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctaca 4788  T
Q  170 agtctccacctccaccatctccatc 194  Q
    |||| |||||||||||||| |||||    
T  4789 agtcaccacctccaccatccccatc 4813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 52821319 - 52821254
Alignment:
Q  45 accttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccacc 110  Q
    ||||||||| ||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||||    
T  52821319 accttcacctcctccaccttactactataaatctcctcctccaccctctccctcccctcctccacc 52821254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 52821507 - 52821356
Alignment:
Q  49 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 148  Q
    ||||| || |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||   ||| ||||| || ||||| || || || ||||    
T  52821507 tcacccccacctccttactactataaatctccaccaccaccctctccctcacctccaccaccttactactacaagtccccaccaccaccctctccctcac 52821408  T
Q  149 caccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 200  Q
    | || ||||||||    |||||||| || || ||||| ||||| ||||||||    
T  52821407 ctccacctccttactactacaagtcacctccaccaccctctccctcacctcc 52821356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 11879349 - 11879407
Alignment:
Q  142 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 200  Q
    ||||||||||| ||||||||| ||||||| || |||||||| ||||| |||||||||||    
T  11879349 ccttcaccaccacctccttatgtttacaaatcgccacctcctccatccccatcacctcc 11879407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 11904893 - 11905039
Alignment:
Q  58 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctc 157  Q
    ||||| |||||||| || || ||||| ||||| || ||||||||||||||||||||    || ||||| || || || || || || || ||||| || |    
T  11904893 cctccatactactataagtcaccacccccaccatccccatcacctcctccaccatactattacaagtccccccctccaccatcaccatctccaccaccac 11904992  T
Q  158 cttatatttacaagtctccacctccaccatctccatcacctcctcca 204  Q
    | ||   ||||||||| |||||||||||||||||||| |||||||||    
T  11904993 catactattacaagtcaccacctccaccatctccatctcctcctcca 11905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11881946 - 11881995
Alignment:
Q  64 tactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  11881946 tactactacaagtcaccacccccaccatctccatcacctcctccaccata 11881995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11891180 - 11891229
Alignment:
Q  64 tactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  11891180 tactactacaagtcaccacccccaccatctccatcacctcctccaccata 11891229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 11879442 - 11879557
Alignment:
Q  70 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 169  Q
    ||||| || ||||| |||||  |||| ||||| || || || ||||| || |||||||| ||||| || || ||||||||||| ||||||||| | ||||    
T  11879442 tacaagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtaca 11879541  T
Q  170 agtctccacctccacc 185  Q
    |||| ||||| |||||    
T  11879542 agtcaccaccaccacc 11879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 52821757 - 52821674
Alignment:
Q  45 accttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcacc 128  Q
    |||||||||||| || |||||| | ||||| |||||||||||||||||  |||| ||||| || || ||||| || ||||||||    
T  52821757 accttcaccaccaccgccttacgagtacaagtctccacctccaccttcctcatcccctccacctccttatgtatacaagtcacc 52821674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 11881952 - 11881990
Alignment:
Q  166 tacaagtctccacctccaccatctccatcacctcctcca 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11881952 tacaagtcaccacccccaccatctccatcacctcctcca 11881990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 11891186 - 11891224
Alignment:
Q  166 tacaagtctccacctccaccatctccatcacctcctcca 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11891186 tacaagtcaccacccccaccatctccatcacctcctcca 11891224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 11902063 - 11902117
Alignment:
Q  143 cttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 197  Q
    |||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  11902063 cttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11904995 - 11905044
Alignment:
Q  64 tactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    ||||| ||||| || ||||||||||| |||||||| ||||||||||||||    
T  11904995 tactattacaagtcaccacctccaccatctccatctcctcctccaccata 11905044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 11905058 - 11905107
Alignment:
Q  79 ccacctccaccttctccatcacctcctccaccatatgtctataagtcacc 128  Q
    ||||||||||| || ||||| |||||||||||||||  ||||||||||||    
T  11905058 ccacctccaccatccccatcccctcctccaccatattactataagtcacc 11905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 52821363 - 52821302
Alignment:
Q  49 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccacc 110  Q
    ||||| || ||||||||||||||||| || || || |||||||| || ||||||||||||||    
T  52821363 tcacctccacctccttactactacaagtcacctccaccaccttcaccttcacctcctccacc 52821302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 11879445 - 11879521
Alignment:
Q  121 aagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 197  Q
    |||||||| ||||| ||  | ||||||||||| ||||||||| | |||||||| ||||| || |||||||| |||||    
T  11879445 aagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11879934 - 11879986
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||||||||||||||| || || ||||| ||||| ||||| ||||||||    
T  11879934 ccttactactacaaatctcccccacccccttcaccatctcctccaccaccata 11879986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11880174 - 11880226
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11880174 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11880226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11880270 - 11880322
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11880270 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11880322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11902674 - 11902726
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11902674 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11902726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11902770 - 11902822
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11902770 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11902822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 68 - 16
Alignment:
Q  61 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 113  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||| || |||||    
T  68 ccttactattacaaatctccaccaccaccatctccctcacctccacctccata 16  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University