View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_6 (Length: 479)
Name: NF12042_high_6
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 207 - 463
Target Start/End: Original strand, 43456047 - 43456303
Alignment:
| Q |
207 |
taaataatgccttttaacatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagacttcaatgaatttgtg |
306 |
Q |
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| T |
43456047 |
taaataatgccttttaagatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagactacaatgaatttgtg |
43456146 |
T |
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| Q |
307 |
gctatgatgttgagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattagggaagacaaagacactatcaatat |
406 |
Q |
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| T |
43456147 |
gctatgatgcagagaggcaatgcagatttagaaaataatagtgtaaagtgtagcactagctttaacattggattagggaagacaaagacactatcaatat |
43456246 |
T |
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| Q |
407 |
gttaggaagacaggcactatcagtaatagtgatgtaaagtgtagctctaggtttaac |
463 |
Q |
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| T |
43456247 |
gttaggaagacaggcactatcagtaatagtgatgtaaagtgtaactctaggtttaac |
43456303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 207 - 451
Target Start/End: Original strand, 43464267 - 43464513
Alignment:
| Q |
207 |
taaataatgccttttaacatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagacttcaatgaatttgtg |
306 |
Q |
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| T |
43464267 |
taaatcatgccttttcaaatctcatacatcttttgatgattttggtatgttcattgttttatcctttcaggatggacaaatagactacaatgaatttgtg |
43464366 |
T |
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| Q |
307 |
gctatgatgttgagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattaggg-aagac-aaagacactatcaat |
404 |
Q |
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| T |
43464367 |
gctatgatgcagagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattagggaaagacaaaagacactgtcaat |
43464466 |
T |
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| Q |
405 |
atgttaggaagacaggcactatcagtaatagtgatgtaaagtgtagc |
451 |
Q |
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| T |
43464467 |
atgttaggaagacagacactatcagtagtagtggggtaaagtgtagc |
43464513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 43455829 - 43456020
Alignment:
| Q |
13 |
gagaagctgatcaaaataatgtgagtacatattacaatgttatgtgtttcccttttcgaacaactgaatgaaaagttcattgtgtctattcatgaggtgt |
112 |
Q |
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| T |
43455829 |
gagaagctgatcaaaataatgtgagtacatattacaatgttatgtgcttccattttcgaacaactgaatgaaaagttcattgtgtctattcatgaggtgt |
43455928 |
T |
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| Q |
113 |
cggctcactggtaagagtttgaccttgtaacctcaagaaatgagtccaattttcatgtacaaactaataatatattctccttctccaatatt |
204 |
Q |
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| T |
43455929 |
cagctcactagtaagagtttgaccttgtaacctcaagaaacgagtccaattttcatgtacaaactaataatatattctccttctccaatatt |
43456020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 43464052 - 43464180
Alignment:
| Q |
49 |
atgttatgtgtttcccttttcgaacaactgaatgaaaagttcattgtgtct---attcatgaggtgtcggctcactggtaagagtttgaccttgtaacct |
145 |
Q |
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| T |
43464052 |
atgttatgtgtttccattttccaacaattgaatgaaaagtaaattgaatcttctatttatgaggtgtaagttcaatggtaaaagtttgacattgtaacct |
43464151 |
T |
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| Q |
146 |
caagaaa-tgagtccaattttcatgtaca |
173 |
Q |
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| T |
43464152 |
tgagaaactgagtccaattttcctgtaca |
43464180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 47178643 - 47178688
Alignment:
| Q |
104 |
atgaggtgtcggctcactggtaagagtttgaccttgtaacctcaag |
149 |
Q |
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| T |
47178643 |
atgaagtgtcgactcactggtaagagcttgatcttgtaacctcaag |
47178688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 12556954 - 12556907
Alignment:
| Q |
103 |
catgaggtgtcggctcactggtaagagtttgaccttgtaacctcaaga |
150 |
Q |
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| T |
12556954 |
catgaggtgtcagctcattggtaagagtttgactttgtaacatcaaga |
12556907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 41337651 - 41337693
Alignment:
| Q |
107 |
aggtgtcggctcactggtaagagtttgaccttgtaacctcaag |
149 |
Q |
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| T |
41337651 |
aggtgtcagctcagtggtaagagtttgaccttataacctcaag |
41337693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 15804423 - 15804395
Alignment:
| Q |
121 |
tggtaagagtttgaccttgtaacctcaag |
149 |
Q |
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| T |
15804423 |
tggtaagagtttgaccttgtaacctcaag |
15804395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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