View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_7 (Length: 431)
Name: NF12042_high_7
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 54614992 - 54615369
Alignment:
| Q |
19 |
cctactactttcctttcttctcaagtattcttctttccatctactaactaaactcaatcatatatcattctcattcatcccctgtttcaattcaacaaga |
118 |
Q |
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| T |
54614992 |
cctactactttcctttcctctcaagtattcttctttccatctactaactaaactca-----------------ttcatcccctgtttcaattcaacaaga |
54615074 |
T |
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| Q |
119 |
agctaaagacactaacaccgtcacctaattgttattaataacagtgatcaaacatgttgcactgtttgaatactactactactaattctgggaatctagc |
218 |
Q |
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| T |
54615075 |
agctaaagacactaacaccgtcacctaattgttattaataacagtgatcaaacatgttgcactgtttgaatact---actactaattctgggaatctagc |
54615171 |
T |
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| Q |
219 |
aactgagagttgctcctctgacataacagtgttagaaagacaaagggaaagaatgaagtggcagcaacaacaacaccatcaaggttacttcaacgctgct |
318 |
Q |
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| T |
54615172 |
aactgagagttgctcctctgacataacagtgttggaaagacaaagggaaagaatgaagtggcagcaacaacaacatcatcaaggttacttcaactctgct |
54615271 |
T |
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| Q |
319 |
gctctgttctgttcttctctgcaacaacaagttgacaattctgaagcctcttcacttgctgctgatttactgcctcttcaaatgccaactcttgatgt |
416 |
Q |
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| T |
54615272 |
gctatgttctgttcttctctgcaacaacaagttgacaattctgaagcctcttcacttgctgctgatttactgcctcttcaaatgccaactcttgatgt |
54615369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 42190023 - 42190115
Alignment:
| Q |
204 |
ttctgggaatctagcaactgagagttgctcctctgacataacagtgttagaaagacaaagggaaagaatgaagtggcagcaacaacaacacca |
296 |
Q |
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| T |
42190023 |
ttctgcgaatctagcaaccgagagttgctcctccgacataacagtattggaaagacaaagggaaagaatgaagtggcaacaacaacatcacca |
42190115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 41602334 - 41602268
Alignment:
| Q |
209 |
ggaatctagcaactgagagttgctcctctgacataacagtgttagaaagacaaagggaaagaatgaa |
275 |
Q |
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| T |
41602334 |
ggaatctagcaactgagagttgcacctccaacataacagtgttggaaaaacaaagggaaagaatgaa |
41602268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 9470878 - 9470944
Alignment:
| Q |
209 |
ggaatctagcaactgagagttgctcctctgacataacagtgttagaaagacaaagggaaagaatgaa |
275 |
Q |
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| T |
9470878 |
ggaatctagcaagtgagggttgcacctccaacataacagtgttggaaaaacaaagggaaagaatgaa |
9470944 |
T |
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