View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_high_9 (Length: 373)
Name: NF12042_high_9
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 110 - 366
Target Start/End: Complemental strand, 18955956 - 18955700
Alignment:
| Q |
110 |
ttgggtacgtccactcttcatnnnnnnntatacgttattccgctatgatacacgatgttctacaaggattgattacaagcattcaaagaatcttgttact |
209 |
Q |
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| T |
18955956 |
ttgggtacgtccactcttcataaaaaaatatatgttattccgctatgatacacgatgttctacaaggattgattacaagcattcaaagaatcttgttact |
18955857 |
T |
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| Q |
210 |
ctttcacccaaaagatgaccaataccctagtaagatcgtctctaaattgatcctaatccgagatccatgaatttgtttcctcaacccttcaaattcaatc |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
18955856 |
ctttaacccaaaagatgaccaataccctagtaagatcgtctctaaattgatcctaatccgagatccacgaatttgttgcctcaacccttcaaattcaatc |
18955757 |
T |
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| Q |
310 |
ttgtgagatcctttgtcaatcttcgtaaagattcattcttccacatagattcctttg |
366 |
Q |
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| T |
18955756 |
ttgtgagatcctttgtcaatcttcgtaaaaattcattcttccacatagattcctttg |
18955700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 18955520 - 18955416
Alignment:
| Q |
264 |
aatccgagatccatgaatttgtttcctcaacccttcaaat--tcaatcttgtgagatcctttgtcaatcttcgtaaagattcattcttccacatagattc |
361 |
Q |
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||||||||||||||||||||| | |||||| | ||| ||| |||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
18955520 |
aatccgagatccatgaatttgatgcctcaatcattctaatattcaatcatgtgagatccttcggcaatcttcgtaaagattcattctttcacatagattc |
18955421 |
T |
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| Q |
362 |
ctttg |
366 |
Q |
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| T |
18955420 |
ctttg |
18955416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 15848696 - 15848799
Alignment:
| Q |
249 |
ctctaaattgatcctaatccgagatccatgaatttgtttcctcaacccttcaa--attcaatcttgtgagatcctttgtcaatcttcgtaaagattcatt |
346 |
Q |
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|||||| || |||| ||||| ||||||| ||||||| | ||||||||||| || || ||||||| || |||||| | |||||||||||||||||| || |
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| T |
15848696 |
ctctaacttaatccaaatccaagatccacgaatttgatacctcaacccttaaaatatgcaatcttatgctatccttcggcaatcttcgtaaagattcctt |
15848795 |
T |
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| Q |
347 |
cttc |
350 |
Q |
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|||| |
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| T |
15848796 |
cttc |
15848799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 31633979 - 31634073
Alignment:
| Q |
272 |
atccatgaatttgtttcctcaacccttcaaat--tcaatcttgtgagatcctttgtcaatcttcgtaaagattcattcttccacatagattcctt |
364 |
Q |
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||||||||| ||| | ||||||||||| |||| | |||| | |||||| ||||| |||| ||||| ||||||| ||||| |||||||||||||| |
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| T |
31633979 |
atccatgaaattgatgcctcaacccttgaaatctttaatcctatgagattctttgacaatattcgtcaagattccttctttcacatagattcctt |
31634073 |
T |
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