View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_11 (Length: 296)
Name: NF12042_low_11
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_11 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 39688895 - 39688597
Alignment:
| Q |
18 |
ttattatctatacaggtgaagaatgtaacactgttgttatcatagcatgga--------------------tcatcaactttgactttattgagagttcc |
97 |
Q |
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| T |
39688895 |
ttattatctacacaggtgaagaatgtaacactgttgttatcatagcatggaatataaaattaggtcttgtatcatcaactttgactttattgagagctcc |
39688796 |
T |
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| Q |
98 |
taggacactagaacacaatacaacctaaaaaagcttcatcatattcacaagttatgtaaatcttaacactttttcattgtgaagttgatcgtaaatttgt |
197 |
Q |
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| T |
39688795 |
taggacactagaacacaatacaacctaaaaaagcttcatcatattcacaagttatgtaaatcttaacactttttcattgtgaagttgatcgtaaatttgt |
39688696 |
T |
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| Q |
198 |
taattttgttcatttgagcagcatatgtttcttattcttatgagattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaat |
296 |
Q |
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| T |
39688695 |
taattttgttcatttgagcagcatatgtttcttattcttatgagattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaat |
39688597 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 30903004 - 30903079
Alignment:
| Q |
221 |
tatgtttcttattcttatgagattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaat |
296 |
Q |
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| T |
30903004 |
tatgtttcttattctcctgagattgcagctaggtaccttgattcatctagcagttattaacttggttattttgaat |
30903079 |
T |
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