View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12042_low_15 (Length: 246)
Name: NF12042_low_15
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 10340979 - 10340888
Alignment:
| Q |
17 |
atcaagaagttttgcactggaataggttgcagctgaacatagatccattttctaaagatcattgaaaatatttgtggggtcgattcaatagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10340979 |
atcaagaagttttgcactggaataggtagcagctgaacatagatccattttctaaagatcattgaaaatatttgtggggtcgattcaatagt |
10340888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 10340826 - 10340762
Alignment:
| Q |
170 |
gtacctgttgggcaataatgctctttctttccttttctctaaccttcttctcaaattctgattca |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10340826 |
gtacctgttgggcaataatgttctttctttccttttctttaaccttcttctcaaattctgattca |
10340762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 30495521 - 30495601
Alignment:
| Q |
21 |
agaagttttgcactggaataggttgcagctgaacatagatccattttctaaagatcattgaaaatatttgtggggtcgatt |
101 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30495521 |
agaagttttctactggaataggtagcaactgaacatagatccattttctaaagatcattgaaaatatttgtcgggtcgatt |
30495601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 30535864 - 30535944
Alignment:
| Q |
21 |
agaagttttgcactggaataggttgcagctgaacatagatccattttctaaagatcattgaaaatatttgtggggtcgatt |
101 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30535864 |
agaagttttctactggaataggtagcaactgaacatagatccattttctaaagatcattgaaaatatttgtcgggtcgatt |
30535944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30495671 - 30495723
Alignment:
| Q |
170 |
gtacctgttgggcaataatgctctttctttccttttctctaaccttcttctca |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
30495671 |
gtacctgttgggcaataatgttctttctctccttttctttaactttcttctca |
30495723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30536014 - 30536066
Alignment:
| Q |
170 |
gtacctgttgggcaataatgctctttctttccttttctctaaccttcttctca |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
30536014 |
gtacctgttgggcaataatgttctttctctccttttctttaactttcttctca |
30536066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University