View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_17 (Length: 239)
Name: NF12042_low_17
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_17 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 665 - 891
Alignment:
| Q |
1 |
aagttcctgaaagcaaggaacagcttcgatgtgcatggtgggacccatatttatgttccattatgttacacgtagctgctttatgcatgctatttg-ttt |
99 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
665 |
aagttcctgaatgcaaggaacagcttcgatgtgcatggtgggacccacatttatgttccattatgttacacgtagctgctttatgcatgctctttgtttt |
764 |
T |
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| Q |
100 |
ttcaatcaagctagaccagggggcgtactagct----gcatagagaggggtagcgctttgcctgcccccaaaatttataattttcttagtattagtaagt |
195 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
765 |
ttcaatcaagctagaccagggggcgtactagctaaccttatagagacgggta--gctttgcctgcccccaaaatttataattttattagtattagtaagt |
862 |
T |
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| Q |
196 |
gtattttgtgtttaactatccaataaaat |
224 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
863 |
gtattttgtgtttaattatccaataaaat |
891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31330751 - 31330977
Alignment:
| Q |
1 |
aagttcctgaaagcaaggaacagcttcgatgtgcatggtgggacccatatttatgttccattatgttacacgtagctgctttatgcatgctatttg-ttt |
99 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
31330751 |
aagttcctgaatgcaaggaacagcttcgatgtgcatggtgggacccacatttatgttccattatgttacacgtagctgctttatgcatgctctttgtttt |
31330850 |
T |
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| Q |
100 |
ttcaatcaagctagaccagggggcgtactagct----gcatagagaggggtagcgctttgcctgcccccaaaatttataattttcttagtattagtaagt |
195 |
Q |
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| T |
31330851 |
ttcaatcaagctagaccagggggcgtactagctaaccttatagagacgggta--gctttgcctgcccccaaaatttataattttattagtattagtaagt |
31330948 |
T |
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| Q |
196 |
gtattttgtgtttaactatccaataaaat |
224 |
Q |
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| T |
31330949 |
gtattttgtgtttaattatccaataaaat |
31330977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 2386706 - 2386751
Alignment:
| Q |
161 |
ccccaaaatttataattttcttagtattagtaagtgtattttgtgt |
206 |
Q |
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| T |
2386706 |
ccccaaaatttatatttttattagtattagtaagtgtattttgtgt |
2386751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 1996835 - 1996775
Alignment:
| Q |
164 |
caaaatttataattttcttagtattagtaagtgtattttgtgtttaacta-tccaataaaat |
224 |
Q |
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||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
1996835 |
caaaatttata-ttttattagtatttgtaagtgtattttgtgtttaactactccaataaaat |
1996775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 15514612 - 15514548
Alignment:
| Q |
161 |
ccccaaaatttataattttcttagtattagtaagtgtattttgtgtttaactat-ccaataaaat |
224 |
Q |
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|||||||| |||||||||| || ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
15514612 |
ccccaaaaattataattttatttgtattagtaagtgtattttgtgtttggctatcccaataaaat |
15514548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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