View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_18 (Length: 238)
Name: NF12042_low_18
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 4242775 - 4242556
Alignment:
| Q |
5 |
tttgcatccactgctactacaataatagatccatcacaacgccaatagcaaaaactactctagttttctccataaggtgccatcttgtatcacatccttc |
104 |
Q |
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| T |
4242775 |
tttgcatccactgctactacaataatagatccatcacaacaccaatagcaaaaactactctagttttctccataaggtcccatcttgtttcacatccttc |
4242676 |
T |
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| Q |
105 |
ttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaatgtggcggacctgagcaaatttgctaactcctg |
204 |
Q |
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| T |
4242675 |
ttcattggtgtgaacctttcttcttgtccttgttccagatgtgtatactttagaaggcctatgaaaaagtggcggacctgagcaactttgctaactcctg |
4242576 |
T |
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| Q |
205 |
cattattttacagaacaatt |
224 |
Q |
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|||||||||||||||||||| |
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| T |
4242575 |
cattattttacagaacaatt |
4242556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 4235687 - 4235543
Alignment:
| Q |
81 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaat-gtggcgg |
179 |
Q |
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| T |
4235687 |
gtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcga |
4235588 |
T |
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| Q |
180 |
acctgagcaaatttgctaactcctgcattattttacagaacaatt |
224 |
Q |
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| T |
4235587 |
atttgaccatctttgctaactcctgcaatattttacgtaacaatt |
4235543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 28948905 - 28948995
Alignment:
| Q |
81 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaaa |
171 |
Q |
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| T |
28948905 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaa |
28948995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 34830050 - 34830139
Alignment:
| Q |
81 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtctttgttccagatgtgtatactttagaaggcctatgaaa |
170 |
Q |
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| T |
34830050 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaa |
34830139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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