View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_20 (Length: 226)
Name: NF12042_low_20
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23954366 - 23954575
Alignment:
| Q |
1 |
taaattcactaatcatatgtaatatgtcttcatcatgtgataggaagatccttgtgcatccactaaggagggatgttgaccattttacattgtatttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23954366 |
taaattcactaatcatatgtaatatgtcttcatcatgtgataggaagatccttgtgcatccactaaggagggatgttgaccattttacattgtatttaat |
23954465 |
T |
|
| Q |
101 |
ggttgctgattctttaccaccatatggatgggatagaaacacctttttcaagttagttctagttaaccagctggataggaacaagaacattgtaaaaggt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23954466 |
ggttgctgattctttaccaccatatggatgggatagaaacacctttttcaagttagttctagttaaccagctggataggaacaagaacattgtaaaaggt |
23954565 |
T |
|
| Q |
201 |
tcaaactcta |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
23954566 |
tcaaactcta |
23954575 |
T |
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