View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_21 (Length: 208)
Name: NF12042_low_21
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_21 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 17582375 - 17582170
Alignment:
| Q |
1 |
gcgctttgttcattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttat |
100 |
Q |
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| T |
17582375 |
gcgctttgttcattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttat |
17582278 |
T |
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| Q |
101 |
ctgacaaaatttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattaccagtgtcttggtgcagaacttgtgctatcttagggg |
200 |
Q |
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| T |
17582277 |
ctgacaaaatttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttagggg |
17582178 |
T |
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| Q |
201 |
caacctcc |
208 |
Q |
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|||||||| |
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| T |
17582177 |
caacctcc |
17582170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 14744961 - 14745166
Alignment:
| Q |
1 |
gcgctttgttcattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
14744961 |
gcgctttgttcattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttat |
14745058 |
T |
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| Q |
101 |
ctgacaaaatttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattaccagtgtcttggtgcagaacttgtgctatcttagggg |
200 |
Q |
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| T |
14745059 |
ctgacaaaatttccttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaagttgtgctatcttagggg |
14745158 |
T |
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| Q |
201 |
caacctcc |
208 |
Q |
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| T |
14745159 |
caacctcc |
14745166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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