View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12042_low_3 (Length: 620)
Name: NF12042_low_3
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 119 - 604
Target Start/End: Original strand, 11161113 - 11161598
Alignment:
| Q |
119 |
ctagtcatgttggccagtacattttagcctaaaaaatctagccttgttcgattatttatgcggataatacgtgaatcttcatgttgttgtatgcatgtgg |
218 |
Q |
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| T |
11161113 |
ctagtcatgttggccagtacattttagcctaaaaaatctagccttgttcgactatttatgcggataatacatgaatcttcatgttgttgtatgtatgtgg |
11161212 |
T |
|
| Q |
219 |
cactctaggtctagcatgttttccccatcgcgcgtcgnnnnnnnnnnnnccttatcaatgcatgctacattgcttcaaaatgtgccattgtgaacatagt |
318 |
Q |
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||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11161213 |
cactctaggtctagcctgttttccccatcttgcgtcgttttctatttttccttatcaatgcatgctacattgcttcaaaatgtgccattgtgaacatagt |
11161312 |
T |
|
| Q |
319 |
tccttcagttagcgacattataaaaatgggccacgagcaaaacatagaattgacaagttccacatgcctttcattgcttctaacactcccacgacctgcg |
418 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11161313 |
tccttcagttagcgacattataaacatggggcacgagcaaaacatagaattgacaagttccacatgtctttcattgcttctaacactcccacgacctgcg |
11161412 |
T |
|
| Q |
419 |
tgaaccgtattggacttaagaaagattgtctaatctcggattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccct |
518 |
Q |
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||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11161413 |
tgaaccgtattggacttaagaaagattctccaatctcgaattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccct |
11161512 |
T |
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| Q |
519 |
taattcaaccgttttccgttctcaactagccacttaattatttttaggtgtaaacaaatattcacttccaatttcaggcatgtcct |
604 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
11161513 |
taattcaactgttttccattctcaactagccacttaattatttttaggtgtaaacaaatgttcacaaccaatttcaggcatgtcct |
11161598 |
T |
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