View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12042_low_4 (Length: 522)
Name: NF12042_low_4
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 38864604 - 38865097
Alignment:
| Q |
19 |
gcatggtccaagcagagttgaacctagtacgtaagggataagtacgtaccatgattcaaatgttgttttgactatggttgatcaaatttgatatgaactt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38864604 |
gcatggtccaagcagagttgaacctagtacgtaagggataagtacgtaccatgattcaaatgttgttttcactatggttgatcaaatttgatatgaactt |
38864703 |
T |
|
| Q |
119 |
tcttgctcaaacacaactcaagacattaagagagggtatttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864704 |
tcttgctcaaccacaactcaagacattaagagagggtatttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatc |
38864803 |
T |
|
| Q |
219 |
cttataacggtttctagtactggcacaacaattggttgttgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatg |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864804 |
cttataacggtttctagtactggcataacaattggttgttgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatg |
38864903 |
T |
|
| Q |
319 |
agtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagaca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864904 |
ggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagaca |
38865003 |
T |
|
| Q |
419 |
tataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38865004 |
tataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
38865097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 167 - 511
Target Start/End: Original strand, 38840682 - 38841029
Alignment:
| Q |
167 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttgt---tgtgac |
263 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||| || ||| |
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|
| T |
38840682 |
ttatatttccctatagttacgttccaaagcttcgtgctctagtggttcgatccttataataatttctggcactggcaacacaattggttgcacctgcgac |
38840781 |
T |
|
| Q |
264 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
363 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
38840782 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38840881 |
T |
|
| Q |
364 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| |
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|
| T |
38840882 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttga |
38840981 |
T |
|
| Q |
464 |
atagctcactgtggggaatgttttgagagctttcttcttgattccttt |
511 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
38840982 |
gtagctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38841029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 170 - 512
Target Start/End: Original strand, 38861297 - 38861642
Alignment:
| Q |
170 |
tatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttg---ttgtgaccga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| | ||||||| | ||||||||| ||| |||| | |
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|
| T |
38861297 |
tatttctctatagttacgttccaaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttgcacttgcgaccca |
38861396 |
T |
|
| Q |
267 |
acaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggt |
366 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38861397 |
ccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggt |
38861496 |
T |
|
| Q |
367 |
tgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaata |
466 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | ||||| |
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|
| T |
38861497 |
tgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaata |
38861596 |
T |
|
| Q |
467 |
gctcactgtggggaatgttttgagagctttcttcttgattcctttg |
512 |
Q |
| |
|
||||| ||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38861597 |
gctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38861642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 167 - 512
Target Start/End: Complemental strand, 38851222 - 38850874
Alignment:
| Q |
167 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttg---ttgtgac |
263 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | | || ||||||||||| |||||| |||||| | ||||||| ||||||||||| ||| ||| |
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|
| T |
38851222 |
ttatatttccctatagttacgctccaaagcttgaggttctagtggttggatagttataatagtttctggcactggcaacacaattggttgcacttgcgac |
38851123 |
T |
|
| Q |
264 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
363 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
38851122 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38851023 |
T |
|
| Q |
364 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
463 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | || |
|
|
| T |
38851022 |
ggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtgga |
38850923 |
T |
|
| Q |
464 |
atagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
512 |
Q |
| |
|
|||||||| ||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38850922 |
atagctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38850874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 268 - 511
Target Start/End: Original strand, 38858524 - 38858767
Alignment:
| Q |
268 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
367 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
|
| Q |
368 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| ||| |
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|
| T |
38858624 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38858723 |
T |
|
| Q |
468 |
ctcactgtggggaatgttttgagagctttcttcttgattccttt |
511 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
38858724 |
ctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38858767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 266 - 512
Target Start/End: Original strand, 38846604 - 38846850
Alignment:
| Q |
266 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
365 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38846604 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38846703 |
T |
|
| Q |
366 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
38846704 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagtttcaactcagttgaat |
38846803 |
T |
|
| Q |
466 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
512 |
Q |
| |
|
| || ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38846804 |
aacttactgttgggaatgtcttgagagctttcttcttgattcctttg |
38846850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 266 - 512
Target Start/End: Original strand, 38826996 - 38827242
Alignment:
| Q |
266 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
365 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38826996 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38827095 |
T |
|
| Q |
366 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
38827096 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttttaactcagttgaat |
38827195 |
T |
|
| Q |
466 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
512 |
Q |
| |
|
| || ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38827196 |
aacttactgttggaaatgtcttgagagctttcttcttgattcctttg |
38827242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 508
Target Start/End: Original strand, 43665988 - 43666239
Alignment:
| Q |
257 |
ttgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtga |
356 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||| || |||||||| || ||||| || || || ||||||||||||||||||||||||| ||| |
|
|
| T |
43665988 |
ttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaacttagccatttgtcaatgcaacgaacatga |
43666087 |
T |
|
| Q |
357 |
aatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaact |
456 |
Q |
| |
|
||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | |||||| | |||||||| || | ||||| || |
|
|
| T |
43666088 |
aatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacacactccgagtccaaactcggcaatttcagct |
43666187 |
T |
|
| Q |
457 |
cagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
508 |
Q |
| |
|
|| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
43666188 |
catctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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