View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12042_low_6 (Length: 479)
Name: NF12042_low_6
Description: NF12042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12042_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 207 - 463
Target Start/End: Original strand, 43456047 - 43456303
Alignment:
| Q |
207 |
taaataatgccttttaacatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagacttcaatgaatttgtg |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43456047 |
taaataatgccttttaagatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagactacaatgaatttgtg |
43456146 |
T |
|
| Q |
307 |
gctatgatgttgagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattagggaagacaaagacactatcaatat |
406 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43456147 |
gctatgatgcagagaggcaatgcagatttagaaaataatagtgtaaagtgtagcactagctttaacattggattagggaagacaaagacactatcaatat |
43456246 |
T |
|
| Q |
407 |
gttaggaagacaggcactatcagtaatagtgatgtaaagtgtagctctaggtttaac |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43456247 |
gttaggaagacaggcactatcagtaatagtgatgtaaagtgtaactctaggtttaac |
43456303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 207 - 451
Target Start/End: Original strand, 43464267 - 43464513
Alignment:
| Q |
207 |
taaataatgccttttaacatctcatacatgttttgatgattttggtatgttcattgttttaccctttcaggatggacaaatagacttcaatgaatttgtg |
306 |
Q |
| |
|
||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43464267 |
taaatcatgccttttcaaatctcatacatcttttgatgattttggtatgttcattgttttatcctttcaggatggacaaatagactacaatgaatttgtg |
43464366 |
T |
|
| Q |
307 |
gctatgatgttgagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattaggg-aagac-aaagacactatcaat |
404 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
43464367 |
gctatgatgcagagaggcaatgcagatttagaaaataatagtgtaaagtgtagtactagctttaacattggattagggaaagacaaaagacactgtcaat |
43464466 |
T |
|
| Q |
405 |
atgttaggaagacaggcactatcagtaatagtgatgtaaagtgtagc |
451 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
43464467 |
atgttaggaagacagacactatcagtagtagtggggtaaagtgtagc |
43464513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 43455829 - 43456020
Alignment:
| Q |
13 |
gagaagctgatcaaaataatgtgagtacatattacaatgttatgtgtttcccttttcgaacaactgaatgaaaagttcattgtgtctattcatgaggtgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455829 |
gagaagctgatcaaaataatgtgagtacatattacaatgttatgtgcttccattttcgaacaactgaatgaaaagttcattgtgtctattcatgaggtgt |
43455928 |
T |
|
| Q |
113 |
cggctcactggtaagagtttgaccttgtaacctcaagaaatgagtccaattttcatgtacaaactaataatatattctccttctccaatatt |
204 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455929 |
cagctcactagtaagagtttgaccttgtaacctcaagaaacgagtccaattttcatgtacaaactaataatatattctccttctccaatatt |
43456020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 43464052 - 43464180
Alignment:
| Q |
49 |
atgttatgtgtttcccttttcgaacaactgaatgaaaagttcattgtgtct---attcatgaggtgtcggctcactggtaagagtttgaccttgtaacct |
145 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||| |||| ||| ||| ||||||||| | ||| |||||| |||||||| ||||||||| |
|
|
| T |
43464052 |
atgttatgtgtttccattttccaacaattgaatgaaaagtaaattgaatcttctatttatgaggtgtaagttcaatggtaaaagtttgacattgtaacct |
43464151 |
T |
|
| Q |
146 |
caagaaa-tgagtccaattttcatgtaca |
173 |
Q |
| |
|
||||| |||||||||||||| |||||| |
|
|
| T |
43464152 |
tgagaaactgagtccaattttcctgtaca |
43464180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 47178643 - 47178688
Alignment:
| Q |
104 |
atgaggtgtcggctcactggtaagagtttgaccttgtaacctcaag |
149 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
47178643 |
atgaagtgtcgactcactggtaagagcttgatcttgtaacctcaag |
47178688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 12556954 - 12556907
Alignment:
| Q |
103 |
catgaggtgtcggctcactggtaagagtttgaccttgtaacctcaaga |
150 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
12556954 |
catgaggtgtcagctcattggtaagagtttgactttgtaacatcaaga |
12556907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 41337651 - 41337693
Alignment:
| Q |
107 |
aggtgtcggctcactggtaagagtttgaccttgtaacctcaag |
149 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
41337651 |
aggtgtcagctcagtggtaagagtttgaccttataacctcaag |
41337693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 15804423 - 15804395
Alignment:
| Q |
121 |
tggtaagagtttgaccttgtaacctcaag |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15804423 |
tggtaagagtttgaccttgtaacctcaag |
15804395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University