View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12043_high_6 (Length: 297)
Name: NF12043_high_6
Description: NF12043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12043_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 47041761 - 47041471
Alignment:
| Q |
1 |
agttgtatccacaggtgatagaagagacatagcttctattccatttagcttcaattcatccaatgtataaagcctttgaggaacctgcacagtaattcac |
100 |
Q |
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| T |
47041761 |
agttgtatccacaggtgatagaagagacatagcttctattccatttagcttcaattcatccaatgtataaagcctttgaggaacctgcacagtaattcac |
47041662 |
T |
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| Q |
101 |
acaacaaatgaaacaagctacaaatacagtccctaatcttttatattcctaacttcataactcaagactaacatcaaggatcattaatgtcactttaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47041661 |
acaacaaatgaaacaagctacaaatacagtccctaatcttt-atattcctaacttcataactcaagactaacatcaaggatcattagtgtcactttaatt |
47041563 |
T |
|
| Q |
201 |
aaccaacctgtctagccgcaccgaaacactgaagcccgttgggtttgccttgtaaatccttaacaagtgcaagagcagctctatcgtcccct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47041562 |
aaccaacctgtctagccgcaccgaaacactgaagcccgttgggtttgccttgtaaatccttaacaagtgcaagagcagctctatcatcccct |
47041471 |
T |
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