View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12043_low_2 (Length: 418)
Name: NF12043_low_2
Description: NF12043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12043_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 91 - 414
Target Start/End: Complemental strand, 31942107 - 31941787
Alignment:
| Q |
91 |
ggagggtgggtgagtc-attcaattactaaatctttaagttaagtagtcttatcgttaaaaattcatgtagaaataatgaataatatacgtaagatctga |
189 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
31942107 |
ggagggtgggtgagactattcaattactaaatctttaaattaaatagttttatcgttaaaaattcatgtaaaaataataaataatatatgtaagatctga |
31942008 |
T |
|
| Q |
190 |
attcgaaccggacatnnnnnnnnnn-ttcattttgaatttgtttaaccgcgcgctggtaagaaagaaggacgactgaccaggcaagaagagcatgagagg |
288 |
Q |
| |
|
||||||| | ||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31942007 |
attcgaatccgacatcaaaaaaaaaattcattt-gaatttgtttaaccgc----tggtaagaaagaaggactactgaccaggcaagaagagcatgagagg |
31941913 |
T |
|
| Q |
289 |
agaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttggtcaaagtattccttc |
388 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31941912 |
agaattatcccactgtgaactgcactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttgctcaaagtattccttc |
31941813 |
T |
|
| Q |
389 |
caaccgctccgtctctgctcctcctc |
414 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
31941812 |
caaccgctccgtctctgcttctcctc |
31941787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 31956167 - 31956019
Alignment:
| Q |
265 |
accaggcaagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactct |
364 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||| |||| ||| ||||||||| |
|
|
| T |
31956167 |
accaggcaagaagagtatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcctcttcaatcaactct |
31956068 |
T |
|
| Q |
365 |
ttcgcttggtcaaagtattccttccaaccgctccgtctctgctcctcct |
413 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
31956067 |
ttcgcttgctcaaagtattcttcccaaccgctccgtctctgcttctcct |
31956019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 31968039 - 31967904
Alignment:
| Q |
272 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctg---tttcgatcaactctttcg |
368 |
Q |
| |
|
||||||||||| ||||||||||||||| || | |||| ||||| |||||||||||||||||||||||||| |||| | | |||| ||||| |||| |
|
|
| T |
31968039 |
aagaagagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtcagcaactccgataaactccttcg |
31967940 |
T |
|
| Q |
369 |
cttggtcaaagtattccttccaaccgctccgtctct |
404 |
Q |
| |
|
| || ||||| ||||||||||||||| ||||||||| |
|
|
| T |
31967939 |
catgctcaaaatattccttccaaccggtccgtctct |
31967904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 49789512 - 49789548
Alignment:
| Q |
312 |
actccaacggcgaaaaccaccgcggaggtccatcgtc |
348 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
49789512 |
actccaacggcgataaccaccgcggaggtccaccgtc |
49789548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University