View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12043_low_4 (Length: 387)
Name: NF12043_low_4
Description: NF12043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12043_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 24751329 - 24751116
Alignment:
| Q |
1 |
acttcatctccgcaacaacgccattggaggccccatttaaggactagcag---acttggacttgtcgttgaaccgattatccggtctaagtccttttacg |
97 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||| |||||||| ||||||||| |
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| T |
24751329 |
acttgatctccgcaacaacaccattggaggccccatttaagggctagcagcagacttggacttgttgttgaatcgattacgcggtctaattccttttaca |
24751230 |
T |
|
| Q |
98 |
ttaggataaatgttggtcctggcctcgttgaacctgaagtatagaaacttgacaggaaggatcccaaggactttgttggcttatagaatgaaccatttgg |
197 |
Q |
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| T |
24751229 |
ctaggatacacgtcggtcctggtcttgttgaacctgaagtatagaaacttgatgggaaggatcccaaggactttgttggcttctagaatgagccatttgg |
24751130 |
T |
|
| Q |
198 |
atttaagtagaaac |
211 |
Q |
| |
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|||||||||||||| |
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| T |
24751129 |
atttaagtagaaac |
24751116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 207 - 381
Target Start/End: Complemental strand, 24751082 - 24750906
Alignment:
| Q |
207 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcat--atgga |
304 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||| |
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| T |
24751082 |
gaaacttcatatttcattaaccttgatctgccgcggaacaatttgaacggtttaattcctaagtctatggcattagctttgtacatttttcatacatgga |
24750983 |
T |
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| Q |
305 |
ctttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatcacctttgc |
381 |
Q |
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| T |
24750982 |
ctttactcacaaccgtctctttgggagaatttcggttgcttcttccttacgccatctacagccggcatcatctttgc |
24750906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 51501252 - 51501428
Alignment:
| Q |
35 |
atttaaggactagcagacttggacttgtcgttgaaccgattatccggtctaagtccttttacgttaggataaatgttggtcctggcctcgttgaacctga |
134 |
Q |
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| T |
51501252 |
atttatgggctagcagacttggacttatcgttgaaccgattatctggtccaattcctttttcgctaggacaaatgccggtcttggactcgttgaacctga |
51501351 |
T |
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| Q |
135 |
agtatagaaacttgacaggaaggatcccaaggactttgttggcttatagaatgaaccatttggatttaagtagaaac |
211 |
Q |
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| T |
51501352 |
agtataacaaattgactgggaggatcccaaggactttgttggcttctagaatgagtcatttggatttaagtagaaac |
51501428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 24766331 - 24766166
Alignment:
| Q |
45 |
tagcagacttggacttgtcgttgaaccgattatccggtctaagtccttttacgttaggataaatgttggtcctggcctcgttgaacctgaagtatagaaa |
144 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| || ||||||| || ||||| |||||| ||| ||| |||| ||||||||||||||| || |
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| T |
24766331 |
tagcagacttggacttgtccttgaaccaattatccggtccaattcctttttcgctaggacaaatgtcagtcatggactcgctgaacctgaagtataacaa |
24766232 |
T |
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| Q |
145 |
cttgacaggaaggatcccaaggactttgttggcttatagaatgaaccatttggatttaagtagaaa |
210 |
Q |
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| T |
24766231 |
attgacaggaaggatcccaagtactttgttggcttctagaatgagccatttagatttaagtagaaa |
24766166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 374
Target Start/End: Original strand, 51501462 - 51501629
Alignment:
| Q |
207 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcatatggact |
306 |
Q |
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||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||| | ||| |||||| |
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| T |
51501462 |
gaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcgatggcattagctttgtacattggccatgtggact |
51501561 |
T |
|
| Q |
307 |
ttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatca |
374 |
Q |
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| T |
51501562 |
ttagtcacaaccatctctttgggaaaattccggttgcttcttccttaagccatcttccgccggcatca |
51501629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 24766131 - 24765965
Alignment:
| Q |
207 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcatatggact |
306 |
Q |
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||||||||||||||||| ||||||||| || ||| |||| ||||||| |||||||||| ||| ||||||||| |||||||||||| | ||| |||||| |
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| T |
24766131 |
gaaacttcatatttcatcaaccttgatttgtcgcggaacaatttgaacggtttaattcctaattctatggcaatagctttgtacattggccatgtggact |
24766032 |
T |
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| Q |
307 |
ttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatc |
373 |
Q |
| |
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||| || | || ||||||||||| |||| | |||||||||||||||||||||| ||||| ||||| |
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| T |
24766031 |
ttagtcacaaccatctctttgggaaaattccgattgcttcttccttaagccatcttcagcccgcatc |
24765965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51501125 - 51501161
Alignment:
| Q |
1 |
acttcatctccgcaacaacgccattggaggccccatt |
37 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |
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| T |
51501125 |
acttgatctccgtaacaacgccattggaggccccatt |
51501161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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