View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12043_low_6 (Length: 346)
Name: NF12043_low_6
Description: NF12043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12043_low_6 |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 7010722 - 7010382
Alignment:
| Q |
6 |
agtttattattgatagttctcatccattcataatttccaaaggaaatccgaatacatattaaccaaaaatacaagatgatgaaatatcaaaaaacataaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7010722 |
agtttattattgatagttctcatccattcataatttccaaaggaaatccgaatacatattaaccaaaaatacaagatgaagaaatatcaaaaaacataaa |
7010623 |
T |
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| Q |
106 |
acaaatgggaaatatagttcttacaatggtcaagtacaaacaaagtagtaataaagggtggtgcatatatcaaacttagtaggttgctggtgtgtgagca |
205 |
Q |
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| T |
7010622 |
acaaatgggaaatatagttcttacaatggtcaagtacaaacaaagtagtaataaagggtggtgcatatatcaaacttagtaggttgctggtgtgtgagca |
7010523 |
T |
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| Q |
206 |
atgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaaca |
305 |
Q |
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| T |
7010522 |
atgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaaca |
7010423 |
T |
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| Q |
306 |
cttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
7010422 |
cttgagaagaatcagtggctccaaacaaaggcaacttccac |
7010382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 7007655 - 7007304
Alignment:
| Q |
8 |
tttattattgatagttctcatccattcataatttccaaaggaaatccgaatacatattaaccaaaaatacaa------------gatgatgaaatatcaa |
95 |
Q |
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| T |
7007655 |
tttattattgatagttctcatccattcttaatttccaagggaaatccgaatacatataacaaaaaaatacaataggatgatcttgatgatgaaatatcaa |
7007556 |
T |
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| Q |
96 |
aaaacataaaacaaatgggaaatata--gttcttacaatggtcaagtacaaacaaagtagtaataaagggtggtgcatatatcaaacttagtaggttgct |
193 |
Q |
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| T |
7007555 |
aaaacataaa-caaatgggaaatatatagttcttacaatggtcaagtacaaacaaagtagtaataaagggtggtgcaaatatcaaacttagtaggttgct |
7007457 |
T |
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| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
7007456 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
7007357 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
7007356 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccac |
7007304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1350885 - 1350733
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
1350885 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1350786 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
1350785 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1350733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1358791 - 1358639
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
1358791 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1358692 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
1358691 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1358639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1374343 - 1374191
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
1374343 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1374244 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
1374243 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1374191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1384539 - 1384387
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
1384539 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1384440 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
1384439 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1384387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1390644 - 1390492
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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| T |
1390644 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1390545 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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| T |
1390544 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1390492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 1394890 - 1394738
Alignment:
| Q |
194 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
293 |
Q |
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|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1394890 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatcaacaacttcatcaa |
1394791 |
T |
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| Q |
294 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccac |
346 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
1394790 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccac |
1394738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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