View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12043_low_8 (Length: 228)
Name: NF12043_low_8
Description: NF12043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12043_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 1906304 - 1906107
Alignment:
| Q |
11 |
tgagatgaacacctgcataacagtaccaaaaatttcaaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtcg |
110 |
Q |
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| T |
1906304 |
tgagatgaacacctgcataacagtaccaaaaaattccaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtcg |
1906205 |
T |
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| Q |
111 |
ctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc-gactctgtcaaatttactcgcattagtccttcaaagaatatgctaaggacta |
207 |
Q |
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| T |
1906204 |
ctctcaaatacgtccctgactttatgaatatttcaaaaaagtctctgactctgtcaaatttactcacattagtccttcaaagaatatgctaaggacta |
1906107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 1896385 - 1896248
Alignment:
| Q |
72 |
cgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaag--tctcgactctgtcaaatt |
169 |
Q |
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| T |
1896385 |
cgagtaaaccttcaagttagaccttgattttataggtcgctttcaaatacatctttgactttatgaatatttcaaaaaagtctctcgactctgttaaatt |
1896286 |
T |
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| Q |
170 |
tactcgcattagtccttcaaagaatatgctaaggacta |
207 |
Q |
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| T |
1896285 |
tactcatattaatcctttaaagaatatgttagggacta |
1896248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 8109289 - 8109376
Alignment:
| Q |
100 |
tttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaa-gtctcgactctgtcaaatttactcgcattagtccttc |
187 |
Q |
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| T |
8109289 |
tttgtagggcgctatcaaacaggtccctgatattatgaatatttcaaaaaatgtct-gtctctatcaaatttactcatattagtccttc |
8109376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 53797383 - 53797307
Alignment:
| Q |
73 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
149 |
Q |
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| T |
53797383 |
gagtaaactatcaaattaatctttgattttgtagttcactctcaaataggtcattgactttatgaatattttaaaaa |
53797307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 14748416 - 14748336
Alignment:
| Q |
69 |
gaccgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
149 |
Q |
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| T |
14748416 |
gaccgagtaaaccaccaaattagtccttgacattgcaggacactcttaaataggtccttgactttatgaatatttcaaaaa |
14748336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 10028976 - 10028902
Alignment:
| Q |
73 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaa |
147 |
Q |
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| T |
10028976 |
gagtagaccaccaaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaa |
10028902 |
T |
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