View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12044_high_14 (Length: 233)
Name: NF12044_high_14
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12044_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 36424739 - 36424939
Alignment:
| Q |
18 |
atccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactca |
117 |
Q |
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| T |
36424739 |
atccaccacacacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactca |
36424838 |
T |
|
| Q |
118 |
aacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagccttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36424839 |
aacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggccttt |
36424938 |
T |
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| Q |
218 |
g |
218 |
Q |
| |
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| |
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| T |
36424939 |
g |
36424939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 36421215 - 36421415
Alignment:
| Q |
18 |
atccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
36421215 |
atccaccacatacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctattcactca |
36421314 |
T |
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| Q |
118 |
aacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagccttt |
217 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36421315 |
gacactacaacctggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggccttt |
36421414 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
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| |
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| T |
36421415 |
g |
36421415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 36427712 - 36427912
Alignment:
| Q |
18 |
atccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactca |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||| || || ||||||| |||||| |
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| T |
36427712 |
atccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcactca |
36427811 |
T |
|
| Q |
118 |
aacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagccttt |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||| |||||||| |||||| |
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| T |
36427812 |
aacactacaacccggtgacatgtttgtgtttccaaagggacttgttcattttcagttcaatgctgatacttcaaaacctgctttggctttttctgccttt |
36427911 |
T |
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| Q |
218 |
g |
218 |
Q |
| |
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| |
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| T |
36427912 |
g |
36427912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 19148394 - 19148475
Alignment:
| Q |
18 |
atccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaac |
99 |
Q |
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|||||||||| |||||||| |||||||| || |||||||| ||||| ||||||| ||| | ||||| || ||||||||||| |
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| T |
19148394 |
atccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaac |
19148475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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