View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12044_high_4 (Length: 467)

Name: NF12044_high_4
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12044_high_4
NF12044_high_4
[»] chr4 (13 HSPs)
chr4 (94-445)||(1507771-1508132)
chr4 (94-333)||(4222244-4222492)
chr4 (94-318)||(13714638-13714871)
chr4 (94-335)||(5573507-5573759)
chr4 (336-426)||(1513425-1513517)
chr4 (336-426)||(12121475-12121567)
chr4 (336-425)||(1537785-1537876)
chr4 (336-426)||(1489379-1489471)
chr4 (336-422)||(1548442-1548530)
chr4 (351-425)||(1524519-1524595)
chr4 (336-422)||(1552785-1552873)
chr4 (336-400)||(659726-659790)
chr4 (337-422)||(8187110-8187197)
[»] chr7 (1 HSPs)
chr7 (94-335)||(19804158-19804411)
[»] chr6 (6 HSPs)
chr6 (94-270)||(5129259-5129445)
chr6 (151-335)||(28146709-28146897)
chr6 (94-276)||(26618682-26618872)
chr6 (94-276)||(26724593-26724783)
chr6 (340-425)||(6402850-6402937)
chr6 (146-195)||(5248264-5248313)
[»] scaffold0158 (1 HSPs)
scaffold0158 (94-335)||(12287-12540)
[»] chr3 (3 HSPs)
chr3 (94-336)||(14529019-14529266)
chr3 (148-335)||(19357427-19357614)
chr3 (351-423)||(51120926-51121000)
[»] chr2 (2 HSPs)
chr2 (148-335)||(2694205-2694392)
chr2 (372-425)||(45245139-45245194)
[»] chr8 (3 HSPs)
chr8 (148-335)||(5559580-5559767)
chr8 (336-425)||(18315291-18315382)
chr8 (351-420)||(27922503-27922574)
[»] chr5 (3 HSPs)
chr5 (148-336)||(41530215-41530403)
chr5 (148-268)||(37366720-37366840)
chr5 (163-267)||(23880156-23880260)
[»] chr1 (1 HSPs)
chr1 (197-335)||(22212366-22212507)
[»] scaffold0060 (1 HSPs)
scaffold0060 (290-335)||(38863-38908)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 94 - 445
Target Start/End: Original strand, 1507771 - 1508132
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  1507771 tttcatgttttgtcttatttat-tccttag-taagaaatgcccaaaatgctcttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaa 1507868  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttccctnnnnn 283  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1507869 agttttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttccctaaaaa 1507968  T
Q  284 nnttccaaagacaaaataacttatactgaatttttacatgcggggtattacacccaaactagaagttttgaacttgtcacataccaatgttgatgatgaa 383  Q
      ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1507969 aattccaaagataaaataacttatactgaatttttacatgcggggtattacacccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaa 1508068  T
Q  384 acac--tgtgtaatctcaaagtgttgtcgtgggcttttgcaactcgtgctggatggttgtgctg 445  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1508069 acactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaactcgtgctggatggttgtgctg 1508132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 94 - 333
Target Start/End: Original strand, 4222244 - 4222492
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||    
T  4222244 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgcccttttctacactctttttcaaactaaaatatccgataaaatatcgtaaa 4222343  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttccctnnnnn 283  Q
    || |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         
T  4222344 agttttaagcgaaatatttcattttccatagtctgttgaaataatatgtttcagtcccgaaaagtcttattcacaattaccatttgtccttccct-aaaa 4222442  T
Q  284 nnttccaaagacaaaataacttatactgaatttttacatgcggggtatta 333  Q
      ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  4222443 aattccaaagataaaataacttatactaaatttttacatgcggggtatta 4222492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 94 - 318
Target Start/End: Original strand, 13714638 - 13714871
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  13714638 tttcatgttttgtcttatttatatccttaggtaagaaaagcccaaaatgctcttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaa 13714737  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttccctnnnnn 283  Q
    || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         
T  13714738 agttttaagcgaaatatttcattctccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtcctt-cctaaaaa 13714836  T
Q  284 nnttccaaagacaaaataacttatactgaattttt 318  Q
      || |||||| |||||||||||||||||||||||    
T  13714837 aatttcaaagataaaataacttatactgaattttt 13714871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 94 - 335
Target Start/End: Complemental strand, 5573759 - 5573507
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||          |||||||| |||||||||||||||| ||||||    
T  5573759 tttcatgttttgtcttatttgtatccttaggtaagaaattaccaaaatgcccttttctacactcttgttcaaactagaatatccgataaaataccgtaaa 5573660  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccctnnnn 282  Q
    || |||||  ||||||||| | || |||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||        
T  5573659 agttttaaatgaaatatttcaatcaccatagtccgttgaaataatatgtttcaatcctgaaaagtcttgtgcacaattaccattttgtccttccctaaaa 5573560  T
Q  283 nnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
       ||| ||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  5573559 aaattcaaaagataaaataactgatattgaacttttacatgcggggtattaca 5573507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 1513425 - 1513517
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacactgt--gtaatctcaaagtgttgtcgtgggcttttgcaactc 426  Q
    |||||||||||||| ||||||||||||  ||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  1513425 cccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactc 1513517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 12121475 - 12121567
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacactgt--gtaatctcaaagtgttgtcgtgggcttttgcaactc 426  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  12121475 cccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactc 12121567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 1537785 - 1537876
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacactgtg--taatctcaaagtgttgtcgtgggcttttgcaact 425  Q
    |||||||||||||| |||||||||||| |||| |||||| ||||  ||||||||||  ||||||||||||||||||||||||||||||||||    
T  1537785 cccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaact 1537876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 1489379 - 1489471
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacactgtg--taatctcaaagtgttgtcgtgggcttttgcaactc 426  Q
    |||||||||||||| |||||||||||| |||| |||||| |  | |||||||||||  ||||||||| |||||| ||||||||||||||||||    
T  1489379 cccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactc 1489471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 1548442 - 1548530
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacact--gtgtaatctcaaagtgttgtcgtgggcttttgca 422  Q
    |||||||| || || ||||||||||||||||| | | ||||||||||||||||   ||| ||||||||| ||||| |||||||||||||    
T  1548442 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 1524519 - 1524595
Alignment:
Q  351 ttgaacttgtcacataccaatgttgatgatgaaacactgtgta--atctcaaagtgttgtcgtgggcttttgcaact 425  Q
    ||||| ||||||| ||| | |||||||||||||||||| | ||  |||||| || ||||||||||||||||||||||    
T  1524519 ttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaact 1524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 1552785 - 1552873
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacact--gtgtaatctcaaagtgttgtcgtgggcttttgca 422  Q
    |||||||| ||||| ||||| ||||||||||| ||| || |||||||||||||   ||| || ||||||  ||||||||||||||||||    
T  1552785 cccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttgca 1552873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 659790 - 659726
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacactgtgtaatctcaa 400  Q
    ||||||||||| || ||||||||||||||||| | |||| || |||||||||| ||| |||||||    
T  659790 cccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacactatgtgatctcaa 659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 8187110 - 8187197
Alignment:
Q  337 ccaaactagaagttttgaacttgtcacataccaatgttgatgatgaaacac--tgtgtaatctcaaagtgttgtcgtgggcttttgca 422  Q
    ||||||| || || ||||||||||||||||| |  ||||||||| ||||||  | || ||| |||||| ||||| |||||||||||||    
T  8187110 ccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggcttttgca 8187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 94 - 335
Target Start/End: Original strand, 19804158 - 19804411
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||          |||||||| |||||||||||||||||||||||    
T  19804158 tttcatgttttgtcttatttgtatccttaggtaagaaatgacaaaaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaa 19804257  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccct-nnn 281  Q
    || ||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |||||        
T  19804258 agttttaagcgaaatacttcattccccatagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtctgtccctaaaa 19804357  T
Q  282 nnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
        ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  19804358 aaaattccaaagataaaataactgatactgaatttttacatgcggggtattaca 19804411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 5129445 - 5129259
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||          |||||| |||||||||||||||||||| ||||    
T  5129445 tttcatgttttgtcttatttatatctttaggtaagaaatgcccaaaatgcccttttctacactcttcttcaaaccaaaatatccgataaaatatcataaa 5129346  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgt 270  Q
    |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5129345 aattttaagcgaaatatttcattccccatagtctgttgaaataatatgtttcagtcccgaaaagttttatacacaattaccatttgt 5129259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 151 - 335
Target Start/End: Original strand, 28146709 - 28146897
Alignment:
Q  151 ttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtct 250  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  28146709 ttcaaactagaatatccgataaaatatcgtaaaagttttaagcaaaatatttcattccccatagtccgttgaaataatatgtttcagtcctgaaaagtct 28146808  T
Q  251 tatgcacaattacca-tttgtccttccct---nnnnnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    ||||||||||||||| |||||||||||||          || |||||  ||||||||| |||||||||||||||||||||| |||||||    
T  28146809 tatgcacaattaccattttgtccttccctgaaaaaaagatttcaaagttaaaataactgatactgaatttttacatgcgggatattaca 28146897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 94 - 276
Target Start/End: Complemental strand, 26618872 - 26618682
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||          ||||||||||||||||||||||||||||||||    
T  26618872 tttcatgttttgtcttatttatatccttatgtaagaaatgtccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaa 26618773  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttcc 276  Q
       ||||||||||||||||  |||||| |||||||  | |||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  26618772 tattttaagcgaaatatttctttccccgtagtctg--gtaataatatgttttagtcacgaaaagtcttatgcagaattaccatttgtccttcc 26618682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 94 - 276
Target Start/End: Complemental strand, 26724783 - 26724593
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||          ||||||||||||||||||||||||||||||||    
T  26724783 tttcatgttttgtcttatttatatccttatgtaagaaatgtccaaaatgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaa 26724684  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattaccatttgtccttcc 276  Q
       ||||||||||||||||  |||||| |||||||  | |||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  26724683 tattttaagcgaaatatttctttccccgtagtctg--gtaataatatgttttagtcacgaaaagtcttatgcagaattaccatttgtccttcc 26724593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 6402937 - 6402850
Alignment:
Q  340 aactagaagttttgaacttgtcacataccaatgttgatgatgaaaca--ctgtgtaatctcaaagtgttgtcgtgggcttttgcaact 425  Q
    |||||||||| |||||||||||| |||| || |||||||||||||||  || ||| |||||||||  |||| ||||||||||| ||||    
T  6402937 aactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 5248313 - 5248264
Alignment:
Q  146 ttttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcga 195  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||| ||||    
T  5248313 ttttcttcaaactaaaatatccggtaaaatgtcgtaaaagatttatgcga 5248264  T

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Target: scaffold0158 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 94 - 335
Target Start/End: Complemental strand, 12540 - 12287
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||| ||||||||||||||||||  | ||||||| |||||||          |||||||| |||||||||||||||||||||||    
T  12540 tttcatgttttgtcttatttgtatccttaggtaagaaataactaaaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaa 12441  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccc-tnnn 281  Q
    || ||||||||||||| || |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||         
T  12440 agttttaagcgaaatacttcattccccataatccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccgtcccaaaaa 12341  T
Q  282 nnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
        ||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  12340 aaaattccaaagataaaataactgatactgaatttttacatacggggtattaca 12287  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 94 - 336
Target Start/End: Complemental strand, 14529266 - 14529019
Alignment:
Q  94 tttcatgttttgtcttatttatatccttaggtaagaaatgcccaaaatgctcttttct----------tcaaactaaaatatccgataaaatatcgtaaa 183  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||          |||||||| |||||||||||||||||||||||    
T  14529266 tttcatgttttgtcttatttgtatccttaggtaagaaatgaccaaaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaa 14529167  T
Q  184 agctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccct--nn 280  Q
    || |||||| ||||||||| ||||||||||||| |         ||||||||||||| |||||||||||||||||||||||| |||||||||||||        
T  14529166 agttttaagtgaaatatttcattccccatagtccg---------tatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccttccctaaaa 14529076  T
Q  281 nnnnnttccaaagacaaaataacttatactgaa-tttttacatgcggggtattacac 336  Q
         ||||||||| ||||||||| ||| |||| |||||||||||||||||||||||    
T  14529075 aaaaattccaaagataaaataactgatattgaattttttacatgcggggtattacac 14529019  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 19357614 - 19357427
Alignment:
Q  148 ttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaag 247  Q
    |||||||||||||||||||| || |||| ||||||||| ||||||||  | |||  |||| | |||||| |||| ||||||||| ||| |||| ||||||    
T  19357614 ttcttcaaactaaaatatccaattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatatgattcggtcctgaaaag 19357515  T
Q  248 tcttatgcacaattacca-tttgtccttccctnnnnnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    | || || ||| |||||| |||||||||| ||       |||||| || ||||||||| |||||||||||||||||||||| |||||||    
T  19357514 ttttgtgaacagttaccattttgtccttctct-taaattttccaatgataaaataactgatactgaatttttacatgcgggttattaca 19357427  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 51120926 - 51121000
Alignment:
Q  351 ttgaacttgtcacataccaatgttgatgatgaaacactgt--gtaatctcaaagtgttgtcgtgggcttttgcaa 423  Q
    ||||||||||| ||||| |  ||||||||||||| ||| |  |||||||||||| ||||||||||||||||||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 51121000  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 2694392 - 2694205
Alignment:
Q  148 ttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaag 247  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||  | |||  |||| | ||||||||||| ||||||||| ||| |||| ||||||    
T  2694392 ttcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtctgttggaataatatgattcggtcctgaaaag 2694293  T
Q  248 tcttatgcacaattacca-tttgtccttccctnnnnnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    | || || |||||||||| |||||||||| ||       |||||| || ||||||||| || |||||||||||||||||||||||||||    
T  2694292 ttttgtgaacaattaccattttgtccttctct-taaattttccaatgataaaataactgatgctgaatttttacatgcggggtattaca 2694205  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 45245139 - 45245194
Alignment:
Q  372 gttgatgatgaaacactg--tgtaatctcaaagtgttgtcgtgggcttttgcaact 425  Q
    |||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||    
T  45245139 gttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaact 45245194  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 5559580 - 5559767
Alignment:
Q  148 ttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaag 247  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||  | |||  |||| | |||||| |||||||||||||| ||| |||| ||||||    
T  5559580 ttcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttgaaataatatgattcggtcctgaaaag 5559679  T
Q  248 tcttatgcacaattacca-tttgtccttccctnnnnnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    | || || ||| |||||| |||||||||| ||       |||||| || ||||||||| |||||||||||||||||||||| |||||||    
T  5559680 ttttgtgaacagttaccattttgtccttctct-taaattttccaatgataaaataactgatactgaatttttacatgcgggttattaca 5559767  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 18315291 - 18315382
Alignment:
Q  336 cccaaactagaagttttgaacttgtcacataccaatgttgatgatgaa--acactgtgtaatctcaaagtgttgtcgtgggcttttgcaact 425  Q
    |||||||| || || ||||||||||||||||| || ||||||||||||  || || ||| ||||||||| |||||||| |||||||||||||    
T  18315291 cccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaact 18315382  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 27922574 - 27922503
Alignment:
Q  351 ttgaacttgtcacataccaatgttgatgatgaaacactgtgta--atctcaaagtgttgtcgtgggcttttg 420  Q
    |||||||||||| |||| ||||||||||||||| |||| | ||  ||||||||| ||||| |||||||||||    
T  27922574 ttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 27922503  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 336
Target Start/End: Original strand, 41530215 - 41530403
Alignment:
Q  148 ttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaag 247  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||  | |||  |||| | |||||| |||| ||||||||| ||| |||| ||||||    
T  41530215 ttcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatatgattcggtcctgaaaag 41530314  T
Q  248 tcttatgcacaattacca-tttgtccttccctnnnnnnnttccaaagacaaaataacttatactgaatttttacatgcggggtattacac 336  Q
    | || || ||| |||||| |||||||||| ||       |||||| || ||||||| | |||||||||||||||||||||| ||||||||    
T  41530315 ttttgtgaacagttaccattttgtccttctct-taaattttccaatgataaaataattgatactgaatttttacatgcgggttattacac 41530403  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 37366840 - 37366720
Alignment:
Q  148 ttcttcaaactaaaatatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaag 247  Q
    ||||||||||||||||||||||| |||| ||||||||| | |||||| || |||  |||| | |||||| |||| ||||||||| |||  ||| ||||||    
T  37366840 ttcttcaaactaaaatatccgattaaatgtcgtaaaagttctaagcggaaaattccattctcaatagtccgttggaataatatgattcgatcctgaaaag 37366741  T
Q  248 tcttatgcacaattaccattt 268  Q
    | || || |||||||||||||    
T  37366740 ttttgtgaacaattaccattt 37366720  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 23880260 - 23880156
Alignment:
Q  163 tatccgataaaatatcgtaaaagctttaagcgaaatattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaatta 262  Q
    |||| ||||||||  |||||||| ||||||||| |||||| ||||| | ||||| |||||||||||||| | | || |  |||||||||||||| |||||    
T  23880260 tatctgataaaatgccgtaaaagttttaagcgagatatttcattcctcgtagtccgttgaaataatatgatacggttcttaaaagtcttatgcaaaatta 23880161  T
Q  263 ccatt 267  Q
    |||||    
T  23880160 ccatt 23880156  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 22212366 - 22212507
Alignment:
Q  197 atattttattccccatagtctgttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccct--nnnnnnnttccaaag 293  Q
    |||||| ||||||| | ||| |||| ||||||||||||| |||| ||||||||||||||||||||  || |||  ||||| ||         ||||||||    
T  22212366 atatttcattccccgttgtccgttggaataatatgtttcggtcctgaaaagtcttatgcacaattttcattttacccttctcttaaaaaaaattccaaag 22212465  T
Q  294 acaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    | |||| |||||||||| |||||||||||| |||||||||||    
T  22212466 ataaaagaacttatactaaatttttacatgtggggtattaca 22212507  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 38908 - 38863
Alignment:
Q  290 aaagacaaaataacttatactgaatttttacatgcggggtattaca 335  Q
    ||||| ||||||||| ||||||||| |||||||||||| |||||||    
T  38908 aaagataaaataactaatactgaatctttacatgcgggatattaca 38863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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