View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12044_high_5 (Length: 425)
Name: NF12044_high_5
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12044_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 43096464 - 43096069
Alignment:
| Q |
18 |
agatgaagaagttgtgaaagaaagctgcttctttacagaaggactttgcacgttagatttaacctttgaaaattttgcaggtgtgtttacaagactttca |
117 |
Q |
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| T |
43096464 |
agatgaagaagctgtgaaagaaagctgcttctttacagaaggactttgcacgttagatttaacctttgaaaattttgcaggtgtgtttacaagactttca |
43096365 |
T |
|
| Q |
118 |
tcctctttcaccggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaa |
217 |
Q |
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| T |
43096364 |
tcctctttcaccggagccaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaa |
43096265 |
T |
|
| Q |
218 |
ctcttggacttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtagg |
317 |
Q |
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| T |
43096264 |
ctcttggacttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtagg |
43096165 |
T |
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| Q |
318 |
agattttttgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatct |
413 |
Q |
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| T |
43096164 |
agattttttgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatct |
43096069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 130 - 413
Target Start/End: Original strand, 32726597 - 32726878
Alignment:
| Q |
130 |
ggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttggacttg |
229 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
32726597 |
ggagacaccgcaatgctatgacgacgatcactttcggtaattttgttgaatgtgatttttgtgtcaccatcaccaccccaagaaccaactctttgacttg |
32726696 |
T |
|
| Q |
230 |
atgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattttttgtc |
329 |
Q |
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|||||||||| ||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
32726697 |
atgatgtctttgcttttcctttagtagatgttgaaggtattg---cccttgaaacttggtttggattatttgctttttggcttgtagaggattttttatc |
32726793 |
T |
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| Q |
330 |
atcttga-ttttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatct |
413 |
Q |
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| T |
32726794 |
atctttacttttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatct |
32726878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 126 - 413
Target Start/End: Original strand, 44187457 - 44187734
Alignment:
| Q |
126 |
caccggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttgga |
225 |
Q |
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||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
44187457 |
caccggagacaccgcaatgctatgacgacaatcactttcggtaattttgttgaatgtga-------gtcaccatcaccaccccaagaaccaactttttga |
44187549 |
T |
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| Q |
226 |
cttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattttt |
325 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44187550 |
cttgatgatgtctttgcttttcctttagtagatgttgaaggtactgc---ccttgaaacttggtttggattatttgctttttggcttgtagaggattttt |
44187646 |
T |
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| Q |
326 |
tgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatct |
413 |
Q |
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| T |
44187647 |
tatcatcttggctttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatct |
44187734 |
T |
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