View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12044_high_9 (Length: 253)
Name: NF12044_high_9
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12044_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 8142065 - 8141943
Alignment:
| Q |
7 |
gtagcagagatggtcatgatggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaa |
106 |
Q |
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| T |
8142065 |
gtagtagagatggtcatgatggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaa |
8141966 |
T |
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| Q |
107 |
tattcataaaacaaattaataat |
129 |
Q |
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| T |
8141965 |
tattcataaaacaaattaataat |
8141943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 8141880 - 8141835
Alignment:
| Q |
208 |
tttaccattttcagtaatgtacactggtggattgttgtatacattt |
253 |
Q |
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| T |
8141880 |
tttaccattttcagtaatgtacactggtggattgttgtatacattt |
8141835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 8167224 - 8167127
Alignment:
| Q |
25 |
atggtatttaatcctaacaccatctttacgagctacattgattggaactgagtcattcctatatgtagcaatgcctgaaaaatattcataaaacaaat |
122 |
Q |
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| T |
8167224 |
atggtatctgatcctaataccatctttacgggctacgttgactggtattgagtcattccttgattgaccaatgcctgaaacatattcacaaaacaaat |
8167127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 8166139 - 8166101
Alignment:
| Q |
209 |
ttaccattttcagtaatgtacactggtggattgttgtat |
247 |
Q |
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| T |
8166139 |
ttaccattttcagtaatgtagactggtggattcttgtat |
8166101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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